miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 71120 0.68 0.993428
Target:  5'- -uGGgGGAcgucGGggGACuCGUCGCCgccUCCu -3'
miRNA:   3'- ggUCgUCU----UCuuCUG-GUAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 57736 0.68 0.993428
Target:  5'- --cGCAGAAGAGaucGCCGUCGCCc--- -3'
miRNA:   3'- gguCGUCUUCUUc--UGGUAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 53056 0.68 0.992354
Target:  5'- uCCAGguGGAGccGcACCGcCGCCUggacaucUCCa -3'
miRNA:   3'- -GGUCguCUUCuuC-UGGUaGCGGA-------AGG- -5'
13958 3' -50.9 NC_003521.1 + 64950 0.68 0.993428
Target:  5'- -uGGCAGGAGGAGGCCGagaaGCUg-CCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGUag--CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 122463 0.68 0.994296
Target:  5'- gCAGCAuGGAGucgcGAGGgCGUCGCCagCCc -3'
miRNA:   3'- gGUCGU-CUUC----UUCUgGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 146456 0.68 0.995069
Target:  5'- --cGCAGuuGAAgGGCCGUCcGCCggCCa -3'
miRNA:   3'- gguCGUCuuCUU-CUGGUAG-CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 32787 0.68 0.991376
Target:  5'- aCGGC-GA--GAGACCcgCGCCcUCCa -3'
miRNA:   3'- gGUCGuCUucUUCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 92411 0.68 0.992457
Target:  5'- gCCGGUGGAAGGAG-CCGggaaGCCccCCg -3'
miRNA:   3'- -GGUCGUCUUCUUCuGGUag--CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 70318 0.68 0.994296
Target:  5'- cCCAGCAGc--GAGGCgGUgaCGCCgUCCa -3'
miRNA:   3'- -GGUCGUCuucUUCUGgUA--GCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 26146 0.68 0.995069
Target:  5'- aCAGCGGGc--AGACCAUCGuCCUg-- -3'
miRNA:   3'- gGUCGUCUucuUCUGGUAGC-GGAagg -5'
13958 3' -50.9 NC_003521.1 + 101420 0.68 0.995069
Target:  5'- -gAGgAGAGGGacgcAGACCGcgccgCGCUUUCCg -3'
miRNA:   3'- ggUCgUCUUCU----UCUGGUa----GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 124439 0.68 0.995069
Target:  5'- gCCGGCAGgcGcacAGGcGCUAUCGCCUgcaCg -3'
miRNA:   3'- -GGUCGUCuuC---UUC-UGGUAGCGGAag-G- -5'
13958 3' -50.9 NC_003521.1 + 150476 0.68 0.994996
Target:  5'- cCCAGCAGGcuguggaccugccAGAAGGCC--CGCCg--- -3'
miRNA:   3'- -GGUCGUCU-------------UCUUCUGGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 19759 0.68 0.991376
Target:  5'- aCAGCugagaGGAAGAAGGCUGcCGCUUUgCg -3'
miRNA:   3'- gGUCG-----UCUUCUUCUGGUaGCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 225554 0.68 0.993428
Target:  5'- aCCAggcaguGCAGAcGggGACCcgUGUCgUCCu -3'
miRNA:   3'- -GGU------CGUCUuCuuCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 149090 0.68 0.991822
Target:  5'- cUCGGCcGAGGGcAGGCgGUCGCCgcgcacgaugaacgUCCg -3'
miRNA:   3'- -GGUCGuCUUCU-UCUGgUAGCGGa-------------AGG- -5'
13958 3' -50.9 NC_003521.1 + 110724 0.68 0.995069
Target:  5'- aCGGCAGGucccggguGGAGACCAgcgCGUacacgUCCa -3'
miRNA:   3'- gGUCGUCUu-------CUUCUGGUa--GCGga---AGG- -5'
13958 3' -50.9 NC_003521.1 + 65092 0.68 0.995069
Target:  5'- aCCGGCgccaGGAGGAAGAgCggCGCCg--- -3'
miRNA:   3'- -GGUCG----UCUUCUUCUgGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 127107 0.68 0.994296
Target:  5'- gCGGUAGAAGAGGuccACCAgcagCGUCUUg- -3'
miRNA:   3'- gGUCGUCUUCUUC---UGGUa---GCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 71454 0.68 0.994296
Target:  5'- --cGCGGggGAAGACaugCGCCcgCUg -3'
miRNA:   3'- gguCGUCuuCUUCUGguaGCGGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.