miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 116765 0.7 0.980014
Target:  5'- cCCAgGCAGAAG-AGGCCGUcacggaCGCuCUUCa -3'
miRNA:   3'- -GGU-CGUCUUCuUCUGGUA------GCG-GAAGg -5'
13958 3' -50.9 NC_003521.1 + 222311 0.7 0.980014
Target:  5'- aCCAcGCAGGcgguGGAGGGCCAgcgcUGCUUUCg -3'
miRNA:   3'- -GGU-CGUCU----UCUUCUGGUa---GCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 129964 0.7 0.977751
Target:  5'- gCCGGCAGAAGcGGGCguccUCGCCcgUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGgu--AGCGGa-AGg -5'
13958 3' -50.9 NC_003521.1 + 151795 0.7 0.972668
Target:  5'- aCAGCAuGAAGguGGCCGgcaCGUgUUCCa -3'
miRNA:   3'- gGUCGU-CUUCuuCUGGUa--GCGgAAGG- -5'
13958 3' -50.9 NC_003521.1 + 4306 0.7 0.977515
Target:  5'- -aGGCAGAGGGAcggccgggggcucGACCGUCcauGCCUggcgCCa -3'
miRNA:   3'- ggUCGUCUUCUU-------------CUGGUAG---CGGAa---GG- -5'
13958 3' -50.9 NC_003521.1 + 43075 0.7 0.977751
Target:  5'- gCAcCAGGAGAAGAUCGUgGCCUa-- -3'
miRNA:   3'- gGUcGUCUUCUUCUGGUAgCGGAagg -5'
13958 3' -50.9 NC_003521.1 + 192904 0.7 0.977751
Target:  5'- aUCAGCAGcgcGAAGGCCGUCaggGCCaUCa -3'
miRNA:   3'- -GGUCGUCuu-CUUCUGGUAG---CGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 101865 0.7 0.980014
Target:  5'- gCGGCGGuacauGAAGuaGCCGUCGuCCUggUCCa -3'
miRNA:   3'- gGUCGUCuu---CUUC--UGGUAGC-GGA--AGG- -5'
13958 3' -50.9 NC_003521.1 + 193518 0.7 0.9819
Target:  5'- aCAGCGGcuGAGAcgacggaucggacGGACCuUCGCCgggaUCCu -3'
miRNA:   3'- gGUCGUC--UUCU-------------UCUGGuAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 180111 0.7 0.982101
Target:  5'- aCAGCGucuGGGAG-CCGUCGUCgucgUCCa -3'
miRNA:   3'- gGUCGUcu-UCUUCuGGUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 231783 0.7 0.982888
Target:  5'- cCCuGCAGAAGAcgcucauucucacggAGuCCGUgGCUUUCUg -3'
miRNA:   3'- -GGuCGUCUUCU---------------UCuGGUAgCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 116194 0.7 0.972668
Target:  5'- gCCGcGgAGAGGAGGGagaCGUCGCCgucgCCg -3'
miRNA:   3'- -GGU-CgUCUUCUUCUg--GUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 120854 0.7 0.972668
Target:  5'- aCCGGCAGGAGccGGCggccgcgccgugCAUCGCCUcgacacCCa -3'
miRNA:   3'- -GGUCGUCUUCuuCUG------------GUAGCGGAa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 80552 0.7 0.972668
Target:  5'- aCCAGCAcGucGGAcgcGCCGUCGUCUUCg -3'
miRNA:   3'- -GGUCGU-CuuCUUc--UGGUAGCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 153325 0.7 0.972668
Target:  5'- cCCGGCGGcgGAGGAGGCCugggggcCGCCUcgUCg -3'
miRNA:   3'- -GGUCGUC--UUCUUCUGGua-----GCGGA--AGg -5'
13958 3' -50.9 NC_003521.1 + 174016 0.7 0.975305
Target:  5'- -aGGUAGAGGAGGAgCAgcaGCCUgCCu -3'
miRNA:   3'- ggUCGUCUUCUUCUgGUag-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 152863 0.7 0.975305
Target:  5'- aCCAGgGcgccGAGGAGGCCAUCGUgUacUCCa -3'
miRNA:   3'- -GGUCgUc---UUCUUCUGGUAGCGgA--AGG- -5'
13958 3' -50.9 NC_003521.1 + 206049 0.7 0.975305
Target:  5'- aCAGCAGcu--GGACCGUCGguugguaCUUCCa -3'
miRNA:   3'- gGUCGUCuucuUCUGGUAGCg------GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 217613 0.7 0.980014
Target:  5'- aCAGCaAGuacGAGGACCGgcCGCCgUCCg -3'
miRNA:   3'- gGUCG-UCuu-CUUCUGGUa-GCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 85686 0.7 0.975305
Target:  5'- gCCGGCGGggGGcugggcaccggAGGCCugcUGCCggCCa -3'
miRNA:   3'- -GGUCGUCuuCU-----------UCUGGua-GCGGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.