miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 101323 0.69 0.988848
Target:  5'- aCGGCAGGAuccGGCCGUCGgCggCCg -3'
miRNA:   3'- gGUCGUCUUcuuCUGGUAGCgGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 117906 0.69 0.988848
Target:  5'- gCGGCGGcGGggGACCGUagGCCgcauacggcgCCg -3'
miRNA:   3'- gGUCGUCuUCuuCUGGUAg-CGGaa--------GG- -5'
13958 3' -50.9 NC_003521.1 + 198026 0.69 0.987385
Target:  5'- aCAGCGGGAGAA-ACCAaUgGCCcggcgUCCa -3'
miRNA:   3'- gGUCGUCUUCUUcUGGU-AgCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 73633 0.69 0.987385
Target:  5'- gCCAGCccaAGcAGAAGGCCucCGCCgcggCCg -3'
miRNA:   3'- -GGUCG---UCuUCUUCUGGuaGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 227091 0.69 0.990175
Target:  5'- gCGGCGGgcGAGGACCccauggCGCUguaCCg -3'
miRNA:   3'- gGUCGUCuuCUUCUGGua----GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 216435 0.69 0.990049
Target:  5'- gCAGCAccuucgcGggGAAGACCAgagcgaaGCCgcCCa -3'
miRNA:   3'- gGUCGU-------CuuCUUCUGGUag-----CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 114268 0.69 0.990175
Target:  5'- aCCAGgCAGAAGAGGagaggguugcaGCCggUGCCcggCCg -3'
miRNA:   3'- -GGUC-GUCUUCUUC-----------UGGuaGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 110724 0.68 0.995069
Target:  5'- aCGGCAGGucccggguGGAGACCAgcgCGUacacgUCCa -3'
miRNA:   3'- gGUCGUCUu-------CUUCUGGUa--GCGga---AGG- -5'
13958 3' -50.9 NC_003521.1 + 127107 0.68 0.994296
Target:  5'- gCGGUAGAAGAGGuccACCAgcagCGUCUUg- -3'
miRNA:   3'- gGUCGUCUUCUUC---UGGUa---GCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 65092 0.68 0.995069
Target:  5'- aCCGGCgccaGGAGGAAGAgCggCGCCg--- -3'
miRNA:   3'- -GGUCG----UCUUCUUCUgGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 74134 0.68 0.991376
Target:  5'- uCgGGCGGggGGAGGCUcucGUCGCUg--- -3'
miRNA:   3'- -GgUCGUCuuCUUCUGG---UAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 5657 0.68 0.991376
Target:  5'- gCGGCGGAGGGuggggggucgAGACaCGggCGCCcgUCCg -3'
miRNA:   3'- gGUCGUCUUCU----------UCUG-GUa-GCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 32787 0.68 0.991376
Target:  5'- aCGGC-GA--GAGACCcgCGCCcUCCa -3'
miRNA:   3'- gGUCGuCUucUUCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 64950 0.68 0.993428
Target:  5'- -uGGCAGGAGGAGGCCGagaaGCUg-CCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGUag--CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 32852 0.68 0.992457
Target:  5'- aCCGGCAGGgucuGGAGGCCGaucgguuuggCGCCcgcgCCg -3'
miRNA:   3'- -GGUCGUCUu---CUUCUGGUa---------GCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 57736 0.68 0.993428
Target:  5'- --cGCAGAAGAGaucGCCGUCGCCc--- -3'
miRNA:   3'- gguCGUCUUCUUc--UGGUAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 71120 0.68 0.993428
Target:  5'- -uGGgGGAcgucGGggGACuCGUCGCCgccUCCu -3'
miRNA:   3'- ggUCgUCU----UCuuCUG-GUAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 225554 0.68 0.993428
Target:  5'- aCCAggcaguGCAGAcGggGACCcgUGUCgUCCu -3'
miRNA:   3'- -GGU------CGUCUuCuuCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 71454 0.68 0.994296
Target:  5'- --cGCGGggGAAGACaugCGCCcgCUg -3'
miRNA:   3'- gguCGUCuuCUUCUGguaGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 70318 0.68 0.994296
Target:  5'- cCCAGCAGc--GAGGCgGUgaCGCCgUCCa -3'
miRNA:   3'- -GGUCGUCuucUUCUGgUA--GCGGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.