miRNA display CGI


Results 61 - 80 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 180111 0.7 0.982101
Target:  5'- aCAGCGucuGGGAG-CCGUCGUCgucgUCCa -3'
miRNA:   3'- gGUCGUcu-UCUUCuGGUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 231783 0.7 0.982888
Target:  5'- cCCuGCAGAAGAcgcucauucucacggAGuCCGUgGCUUUCUg -3'
miRNA:   3'- -GGuCGUCUUCU---------------UCuGGUAgCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 87393 0.69 0.983462
Target:  5'- gCGGCGGAGgugacgccGAcgcucacgcccaggGGAUCGUCGCCUUUCc -3'
miRNA:   3'- gGUCGUCUU--------CU--------------UCUGGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 209506 0.69 0.98402
Target:  5'- uCCucGUGGggGGucacgguGACCGUCGCCgcugCCg -3'
miRNA:   3'- -GGu-CGUCuuCUu------CUGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 17208 0.69 0.98402
Target:  5'- -uGGCGaGAGAAGAgCGUCGCCgUCg -3'
miRNA:   3'- ggUCGUcUUCUUCUgGUAGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 235594 0.69 0.98561
Target:  5'- cCCGGCAGAaacaccAGAGGcgguguaGCCGUCGCa-UCUg -3'
miRNA:   3'- -GGUCGUCU------UCUUC-------UGGUAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 21099 0.69 0.985779
Target:  5'- gCCAau-GGAGAgauAGACCGUUGCCU-CCg -3'
miRNA:   3'- -GGUcguCUUCU---UCUGGUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 133061 0.69 0.985779
Target:  5'- uCCAGCAGcAGcAGucacaGCCAUCGCag-CCg -3'
miRNA:   3'- -GGUCGUCuUCuUC-----UGGUAGCGgaaGG- -5'
13958 3' -50.9 NC_003521.1 + 166871 0.69 0.985779
Target:  5'- aCAGCAGcAGcAGGCCGUCGgCg-CCg -3'
miRNA:   3'- gGUCGUCuUCuUCUGGUAGCgGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 173075 0.69 0.985779
Target:  5'- gCAGCAGAAGAcuGGACC--UGCCg--- -3'
miRNA:   3'- gGUCGUCUUCU--UCUGGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 70417 0.69 0.985779
Target:  5'- -aAGCGcAGGAAGGCCAccgUCGCCgaaaCCg -3'
miRNA:   3'- ggUCGUcUUCUUCUGGU---AGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 219006 0.69 0.985779
Target:  5'- gCAGCAu-GGggGACCGUC-CCgacgCCg -3'
miRNA:   3'- gGUCGUcuUCuuCUGGUAGcGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 55461 0.69 0.985779
Target:  5'- gCCGGCGGAcu---GCCAUCGCCggUCg -3'
miRNA:   3'- -GGUCGUCUucuucUGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 167744 0.69 0.985779
Target:  5'- uCCGGCcc--GAcGACCGUCagGCCUUCCc -3'
miRNA:   3'- -GGUCGucuuCUuCUGGUAG--CGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 198026 0.69 0.987385
Target:  5'- aCAGCGGGAGAA-ACCAaUgGCCcggcgUCCa -3'
miRNA:   3'- gGUCGUCUUCUUcUGGU-AgCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 73633 0.69 0.987385
Target:  5'- gCCAGCccaAGcAGAAGGCCucCGCCgcggCCg -3'
miRNA:   3'- -GGUCG---UCuUCUUCUGGuaGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 240302 0.69 0.987385
Target:  5'- aUCGGCGGAGGAccGCCcggCGCCccgCCg -3'
miRNA:   3'- -GGUCGUCUUCUucUGGua-GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 201013 0.69 0.987385
Target:  5'- aUCGGCGGAGGAccGCCcggCGCCccgCCg -3'
miRNA:   3'- -GGUCGUCUUCUucUGGua-GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 33656 0.69 0.988848
Target:  5'- gCCAGCAGAGcGGGAuCCAgCGaCCggCCg -3'
miRNA:   3'- -GGUCGUCUUcUUCU-GGUaGC-GGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 81443 0.69 0.988848
Target:  5'- gCCGGUGGucucGAAGACC-UCGaCCUUaCCg -3'
miRNA:   3'- -GGUCGUCuu--CUUCUGGuAGC-GGAA-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.