miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 81443 0.69 0.988848
Target:  5'- gCCGGUGGucucGAAGACC-UCGaCCUUaCCg -3'
miRNA:   3'- -GGUCGUCuu--CUUCUGGuAGC-GGAA-GG- -5'
13958 3' -50.9 NC_003521.1 + 117906 0.69 0.988848
Target:  5'- gCGGCGGcGGggGACCGUagGCCgcauacggcgCCg -3'
miRNA:   3'- gGUCGUCuUCuuCUGGUAg-CGGaa--------GG- -5'
13958 3' -50.9 NC_003521.1 + 101323 0.69 0.988848
Target:  5'- aCGGCAGGAuccGGCCGUCGgCggCCg -3'
miRNA:   3'- gGUCGUCUUcuuCUGGUAGCgGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 216435 0.69 0.990049
Target:  5'- gCAGCAccuucgcGggGAAGACCAgagcgaaGCCgcCCa -3'
miRNA:   3'- gGUCGU-------CuuCUUCUGGUag-----CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 114268 0.69 0.990175
Target:  5'- aCCAGgCAGAAGAGGagaggguugcaGCCggUGCCcggCCg -3'
miRNA:   3'- -GGUC-GUCUUCUUC-----------UGGuaGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 227091 0.69 0.990175
Target:  5'- gCGGCGGgcGAGGACCccauggCGCUguaCCg -3'
miRNA:   3'- gGUCGUCuuCUUCUGGua----GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 130366 0.69 0.990175
Target:  5'- -gGGCAGAAGAGGcCCGgcaGCUggcagUUCCa -3'
miRNA:   3'- ggUCGUCUUCUUCuGGUag-CGG-----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 74134 0.68 0.991376
Target:  5'- uCgGGCGGggGGAGGCUcucGUCGCUg--- -3'
miRNA:   3'- -GgUCGUCuuCUUCUGG---UAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 19759 0.68 0.991376
Target:  5'- aCAGCugagaGGAAGAAGGCUGcCGCUUUgCg -3'
miRNA:   3'- gGUCG-----UCUUCUUCUGGUaGCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 5657 0.68 0.991376
Target:  5'- gCGGCGGAGGGuggggggucgAGACaCGggCGCCcgUCCg -3'
miRNA:   3'- gGUCGUCUUCU----------UCUG-GUa-GCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 32787 0.68 0.991376
Target:  5'- aCGGC-GA--GAGACCcgCGCCcUCCa -3'
miRNA:   3'- gGUCGuCUucUUCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 149090 0.68 0.991822
Target:  5'- cUCGGCcGAGGGcAGGCgGUCGCCgcgcacgaugaacgUCCg -3'
miRNA:   3'- -GGUCGuCUUCU-UCUGgUAGCGGa-------------AGG- -5'
13958 3' -50.9 NC_003521.1 + 53056 0.68 0.992354
Target:  5'- uCCAGguGGAGccGcACCGcCGCCUggacaucUCCa -3'
miRNA:   3'- -GGUCguCUUCuuC-UGGUaGCGGA-------AGG- -5'
13958 3' -50.9 NC_003521.1 + 92411 0.68 0.992457
Target:  5'- gCCGGUGGAAGGAG-CCGggaaGCCccCCg -3'
miRNA:   3'- -GGUCGUCUUCUUCuGGUag--CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 32852 0.68 0.992457
Target:  5'- aCCGGCAGGgucuGGAGGCCGaucgguuuggCGCCcgcgCCg -3'
miRNA:   3'- -GGUCGUCUu---CUUCUGGUa---------GCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 123945 0.68 0.992457
Target:  5'- aCCAGCAGcuggcgcAGAuGGCCAUCGUgcgCCu -3'
miRNA:   3'- -GGUCGUCu------UCUuCUGGUAGCGgaaGG- -5'
13958 3' -50.9 NC_003521.1 + 64950 0.68 0.993428
Target:  5'- -uGGCAGGAGGAGGCCGagaaGCUg-CCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGUag--CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 57736 0.68 0.993428
Target:  5'- --cGCAGAAGAGaucGCCGUCGCCc--- -3'
miRNA:   3'- gguCGUCUUCUUc--UGGUAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 225554 0.68 0.993428
Target:  5'- aCCAggcaguGCAGAcGggGACCcgUGUCgUCCu -3'
miRNA:   3'- -GGU------CGUCUuCuuCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 71120 0.68 0.993428
Target:  5'- -uGGgGGAcgucGGggGACuCGUCGCCgccUCCu -3'
miRNA:   3'- ggUCgUCU----UCuuCUG-GUAGCGGa--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.