Results 101 - 120 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13958 | 3' | -50.9 | NC_003521.1 | + | 5393 | 0.68 | 0.993428 |
Target: 5'- gCCAGCAaGAGAcgacGACCAUCGCa---- -3' miRNA: 3'- -GGUCGUcUUCUu---CUGGUAGCGgaagg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 70693 | 0.68 | 0.993428 |
Target: 5'- uCCAcGCGGuuucGgcGACgGUgGCCUUCCu -3' miRNA: 3'- -GGU-CGUCuu--CuuCUGgUAgCGGAAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 35938 | 0.68 | 0.994213 |
Target: 5'- aCAGCAGGaguucgaAGAAGAagUCGagcUCGCCUgCCg -3' miRNA: 3'- gGUCGUCU-------UCUUCU--GGU---AGCGGAaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 100265 | 0.68 | 0.994296 |
Target: 5'- --uGguGGAGAAGAUCuUCGCCgUCUu -3' miRNA: 3'- gguCguCUUCUUCUGGuAGCGGaAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 70318 | 0.68 | 0.994296 |
Target: 5'- cCCAGCAGc--GAGGCgGUgaCGCCgUCCa -3' miRNA: 3'- -GGUCGUCuucUUCUGgUA--GCGGaAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 71454 | 0.68 | 0.994296 |
Target: 5'- --cGCGGggGAAGACaugCGCCcgCUg -3' miRNA: 3'- gguCGUCuuCUUCUGguaGCGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 127107 | 0.68 | 0.994296 |
Target: 5'- gCGGUAGAAGAGGuccACCAgcagCGUCUUg- -3' miRNA: 3'- gGUCGUCUUCUUC---UGGUa---GCGGAAgg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 150846 | 0.68 | 0.994296 |
Target: 5'- aUAGUgaGGAGGAGGAgCcgCGCCgccgCCg -3' miRNA: 3'- gGUCG--UCUUCUUCUgGuaGCGGaa--GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 122463 | 0.68 | 0.994296 |
Target: 5'- gCAGCAuGGAGucgcGAGGgCGUCGCCagCCc -3' miRNA: 3'- gGUCGU-CUUC----UUCUgGUAGCGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 35679 | 0.68 | 0.994296 |
Target: 5'- aCCcGCAGAcagcAGAAGGCCuucuGUCGCgCggCCc -3' miRNA: 3'- -GGuCGUCU----UCUUCUGG----UAGCG-GaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 150476 | 0.68 | 0.994996 |
Target: 5'- cCCAGCAGGcuguggaccugccAGAAGGCC--CGCCg--- -3' miRNA: 3'- -GGUCGUCU-------------UCUUCUGGuaGCGGaagg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 110724 | 0.68 | 0.995069 |
Target: 5'- aCGGCAGGucccggguGGAGACCAgcgCGUacacgUCCa -3' miRNA: 3'- gGUCGUCUu-------CUUCUGGUa--GCGga---AGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 65092 | 0.68 | 0.995069 |
Target: 5'- aCCGGCgccaGGAGGAAGAgCggCGCCg--- -3' miRNA: 3'- -GGUCG----UCUUCUUCUgGuaGCGGaagg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 124439 | 0.68 | 0.995069 |
Target: 5'- gCCGGCAGgcGcacAGGcGCUAUCGCCUgcaCg -3' miRNA: 3'- -GGUCGUCuuC---UUC-UGGUAGCGGAag-G- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 101420 | 0.68 | 0.995069 |
Target: 5'- -gAGgAGAGGGacgcAGACCGcgccgCGCUUUCCg -3' miRNA: 3'- ggUCgUCUUCU----UCUGGUa----GCGGAAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 26146 | 0.68 | 0.995069 |
Target: 5'- aCAGCGGGc--AGACCAUCGuCCUg-- -3' miRNA: 3'- gGUCGUCUucuUCUGGUAGC-GGAagg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 146456 | 0.68 | 0.995069 |
Target: 5'- --cGCAGuuGAAgGGCCGUCcGCCggCCa -3' miRNA: 3'- gguCGUCuuCUU-CUGGUAG-CGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 72407 | 0.67 | 0.995558 |
Target: 5'- aCCAGCggcggaggcacugaGGAAGAGGGCgAguccUCGCCgUCg -3' miRNA: 3'- -GGUCG--------------UCUUCUUCUGgU----AGCGGaAGg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 104030 | 0.67 | 0.99569 |
Target: 5'- aCCAGCAGggGGuacacgcAGugcuCCGaCGCCgUCUg -3' miRNA: 3'- -GGUCGUCuuCU-------UCu---GGUaGCGGaAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 185507 | 0.67 | 0.995755 |
Target: 5'- uCUGGCAGAAGAacAGugUGUUGUgcuUUUCCa -3' miRNA: 3'- -GGUCGUCUUCU--UCugGUAGCG---GAAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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