Results 81 - 100 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
13958 | 3' | -50.9 | NC_003521.1 | + | 235744 | 0.67 | 0.996741 |
Target: 5'- uCCGGCGauagugguaagcccGuGAGAGGGCCcgCGCguuCUUCCa -3' miRNA: 3'- -GGUCGU--------------C-UUCUUCUGGuaGCG---GAAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 127585 | 0.67 | 0.99636 |
Target: 5'- aCCGGCAGccGcuGACCAaCGCCa--- -3' miRNA: 3'- -GGUCGUCuuCuuCUGGUaGCGGaagg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 21496 | 0.67 | 0.99636 |
Target: 5'- gCCAGCAGggGuu--CUguGUCGCuCUUUCg -3' miRNA: 3'- -GGUCGUCuuCuucuGG--UAGCG-GAAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 196321 | 0.67 | 0.99636 |
Target: 5'- aCC-GCGGAAGgcGGCCggUGCUggCCc -3' miRNA: 3'- -GGuCGUCUUCuuCUGGuaGCGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 82397 | 0.67 | 0.99636 |
Target: 5'- -aAGCGGAuGAGGuCCGUCcCCUgggCCa -3' miRNA: 3'- ggUCGUCUuCUUCuGGUAGcGGAa--GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 30912 | 0.67 | 0.99636 |
Target: 5'- gCGGCAGgcGAgagcgguccugGGGCaGUCGCCgugCCg -3' miRNA: 3'- gGUCGUCuuCU-----------UCUGgUAGCGGaa-GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 219871 | 0.67 | 0.99636 |
Target: 5'- aUCAGCAuGAGGAacaGGGCCAUCaCg-UCCa -3' miRNA: 3'- -GGUCGU-CUUCU---UCUGGUAGcGgaAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 195994 | 0.67 | 0.99636 |
Target: 5'- aCCAGCcccAGGAGcuguGGCgUGUCGCCcUCCg -3' miRNA: 3'- -GGUCG---UCUUCuu--CUG-GUAGCGGaAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 103191 | 0.67 | 0.996245 |
Target: 5'- uCCAGCgAGAAGuagcgcuccauGACCuggaugagGUCGCCggCCa -3' miRNA: 3'- -GGUCG-UCUUCuu---------CUGG--------UAGCGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 96778 | 0.67 | 0.995755 |
Target: 5'- gCAGCGGAAGAAauUCGUCuUCUUCUg -3' miRNA: 3'- gGUCGUCUUCUUcuGGUAGcGGAAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 68683 | 0.67 | 0.995755 |
Target: 5'- gCCGGCGGA-----GCCGUCGCCgcgggacCCg -3' miRNA: 3'- -GGUCGUCUucuucUGGUAGCGGaa-----GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 172963 | 0.67 | 0.995755 |
Target: 5'- aCGGUguaGGAGGggGuucauCCGggcCGCCUUCUg -3' miRNA: 3'- gGUCG---UCUUCuuCu----GGUa--GCGGAAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 164340 | 0.67 | 0.995755 |
Target: 5'- -aGGCAuGAcgacgaccuccgAGgcGACCGUCGCCguggCCg -3' miRNA: 3'- ggUCGU-CU------------UCuuCUGGUAGCGGaa--GG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 92456 | 0.67 | 0.995755 |
Target: 5'- -gGGCGGggGAggggAGGCCAgggcaUCGCC--CCg -3' miRNA: 3'- ggUCGUCuuCU----UCUGGU-----AGCGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 123788 | 0.67 | 0.995755 |
Target: 5'- aCCAcGCAGAGGAu-GCCucguUCGCggUCCu -3' miRNA: 3'- -GGU-CGUCUUCUucUGGu---AGCGgaAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 115352 | 0.67 | 0.995755 |
Target: 5'- aCAGCAcAGGAGGucACgCGUCGCUggCCa -3' miRNA: 3'- gGUCGUcUUCUUC--UG-GUAGCGGaaGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 185507 | 0.67 | 0.995755 |
Target: 5'- uCUGGCAGAAGAacAGugUGUUGUgcuUUUCCa -3' miRNA: 3'- -GGUCGUCUUCU--UCugGUAGCG---GAAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 104030 | 0.67 | 0.99569 |
Target: 5'- aCCAGCAGggGGuacacgcAGugcuCCGaCGCCgUCUg -3' miRNA: 3'- -GGUCGUCuuCU-------UCu---GGUaGCGGaAGG- -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 72407 | 0.67 | 0.995558 |
Target: 5'- aCCAGCggcggaggcacugaGGAAGAGGGCgAguccUCGCCgUCg -3' miRNA: 3'- -GGUCG--------------UCUUCUUCUGgU----AGCGGaAGg -5' |
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13958 | 3' | -50.9 | NC_003521.1 | + | 65092 | 0.68 | 0.995069 |
Target: 5'- aCCGGCgccaGGAGGAAGAgCggCGCCg--- -3' miRNA: 3'- -GGUCG----UCUUCUUCUgGuaGCGGaagg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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