miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 74134 0.68 0.991376
Target:  5'- uCgGGCGGggGGAGGCUcucGUCGCUg--- -3'
miRNA:   3'- -GgUCGUCuuCUUCUGG---UAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 74466 0.71 0.963208
Target:  5'- -uGGCAGAAGAcggcgucGGGCCGcgCGCCgggcgCCg -3'
miRNA:   3'- ggUCGUCUUCU-------UCUGGUa-GCGGaa---GG- -5'
13958 3' -50.9 NC_003521.1 + 76005 0.72 0.948346
Target:  5'- gUCAGCAcGuAGAAGACUcgGUCGCCcaCCg -3'
miRNA:   3'- -GGUCGU-CuUCUUCUGG--UAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 77320 0.66 0.998911
Target:  5'- -gAGCAGAuggcccucaAGguGACCugcaaCGCCUUCUa -3'
miRNA:   3'- ggUCGUCU---------UCuuCUGGua---GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 80544 0.66 0.998687
Target:  5'- gCCGGCGGAGcccAGGCCgcucaugagGUCGUCgagUCCc -3'
miRNA:   3'- -GGUCGUCUUcu-UCUGG---------UAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 80552 0.7 0.972668
Target:  5'- aCCAGCAcGucGGAcgcGCCGUCGUCUUCg -3'
miRNA:   3'- -GGUCGU-CuuCUUc--UGGUAGCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 80594 0.66 0.999262
Target:  5'- gCGGCAGcGGGuuGACCAccUUGUCcUCCa -3'
miRNA:   3'- gGUCGUC-UUCuuCUGGU--AGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 81443 0.69 0.988848
Target:  5'- gCCGGUGGucucGAAGACC-UCGaCCUUaCCg -3'
miRNA:   3'- -GGUCGUCuu--CUUCUGGuAGC-GGAA-GG- -5'
13958 3' -50.9 NC_003521.1 + 82397 0.67 0.99636
Target:  5'- -aAGCGGAuGAGGuCCGUCcCCUgggCCa -3'
miRNA:   3'- ggUCGUCUuCUUCuGGUAGcGGAa--GG- -5'
13958 3' -50.9 NC_003521.1 + 84888 0.66 0.999262
Target:  5'- uCCGGguGGcgcgAGuAGGCCGUcagCGCCcggUCCa -3'
miRNA:   3'- -GGUCguCU----UCuUCUGGUA---GCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 85686 0.7 0.975305
Target:  5'- gCCGGCGGggGGcugggcaccggAGGCCugcUGCCggCCa -3'
miRNA:   3'- -GGUCGUCuuCU-----------UCUGGua-GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 87393 0.69 0.983462
Target:  5'- gCGGCGGAGgugacgccGAcgcucacgcccaggGGAUCGUCGCCUUUCc -3'
miRNA:   3'- gGUCGUCUU--------CU--------------UCUGGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 89239 0.67 0.99736
Target:  5'- uCCAGCGc--GGAGACCGcuaacgcgCGCCgcgUCCc -3'
miRNA:   3'- -GGUCGUcuuCUUCUGGUa-------GCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 92411 0.68 0.992457
Target:  5'- gCCGGUGGAAGGAG-CCGggaaGCCccCCg -3'
miRNA:   3'- -GGUCGUCUUCUUCuGGUag--CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 92456 0.67 0.995755
Target:  5'- -gGGCGGggGAggggAGGCCAgggcaUCGCC--CCg -3'
miRNA:   3'- ggUCGUCuuCU----UCUGGU-----AGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 94363 0.66 0.999262
Target:  5'- -aGGgGGGAGggGuuguuGCgCGUCGCCU-CCg -3'
miRNA:   3'- ggUCgUCUUCuuC-----UG-GUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 96778 0.67 0.995755
Target:  5'- gCAGCGGAAGAAauUCGUCuUCUUCUg -3'
miRNA:   3'- gGUCGUCUUCUUcuGGUAGcGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 97397 0.66 0.998425
Target:  5'- aCAaCGGucGGAGGAUCGUCGCCgUCg -3'
miRNA:   3'- gGUcGUCu-UCUUCUGGUAGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 99330 0.66 0.998425
Target:  5'- aCAGCAGcAGccAAGACC-UCGUCaaagUCCc -3'
miRNA:   3'- gGUCGUCuUC--UUCUGGuAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 100265 0.68 0.994296
Target:  5'- --uGguGGAGAAGAUCuUCGCCgUCUu -3'
miRNA:   3'- gguCguCUUCUUCUGGuAGCGGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.