miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 100779 0.66 0.999262
Target:  5'- gUAGCGcGAGGAGGACgAacagaagagggUCGCCUgggCUg -3'
miRNA:   3'- gGUCGU-CUUCUUCUGgU-----------AGCGGAa--GG- -5'
13958 3' -50.9 NC_003521.1 + 101323 0.69 0.988848
Target:  5'- aCGGCAGGAuccGGCCGUCGgCggCCg -3'
miRNA:   3'- gGUCGUCUUcuuCUGGUAGCgGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 101420 0.68 0.995069
Target:  5'- -gAGgAGAGGGacgcAGACCGcgccgCGCUUUCCg -3'
miRNA:   3'- ggUCgUCUUCU----UCUGGUa----GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 101865 0.7 0.980014
Target:  5'- gCGGCGGuacauGAAGuaGCCGUCGuCCUggUCCa -3'
miRNA:   3'- gGUCGUCuu---CUUC--UGGUAGC-GGA--AGG- -5'
13958 3' -50.9 NC_003521.1 + 102456 0.67 0.996893
Target:  5'- gCGGCAGAucucGAAGACCGUgUGCUUa-- -3'
miRNA:   3'- gGUCGUCUu---CUUCUGGUA-GCGGAagg -5'
13958 3' -50.9 NC_003521.1 + 103191 0.67 0.996245
Target:  5'- uCCAGCgAGAAGuagcgcuccauGACCuggaugagGUCGCCggCCa -3'
miRNA:   3'- -GGUCG-UCUUCuu---------CUGG--------UAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 103228 0.74 0.887249
Target:  5'- cCCAGCuacuGAGGAaacuGGACCAgaucaacCGCCUgUCCg -3'
miRNA:   3'- -GGUCGu---CUUCU----UCUGGUa------GCGGA-AGG- -5'
13958 3' -50.9 NC_003521.1 + 104030 0.67 0.99569
Target:  5'- aCCAGCAGggGGuacacgcAGugcuCCGaCGCCgUCUg -3'
miRNA:   3'- -GGUCGUCuuCU-------UCu---GGUaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 106041 0.72 0.93937
Target:  5'- -aAGCAGggGAAGACgCcgauGUCGCCcUCg -3'
miRNA:   3'- ggUCGUCuuCUUCUG-G----UAGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 110724 0.68 0.995069
Target:  5'- aCGGCAGGucccggguGGAGACCAgcgCGUacacgUCCa -3'
miRNA:   3'- gGUCGUCUu-------CUUCUGGUa--GCGga---AGG- -5'
13958 3' -50.9 NC_003521.1 + 111860 0.66 0.998425
Target:  5'- -gGGCgAGAGGAAGACUAccaCGCagUCCg -3'
miRNA:   3'- ggUCG-UCUUCUUCUGGUa--GCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 114056 0.66 0.99812
Target:  5'- aCCAGCcugaacguGgcGAAGAUCGUCGUCc-CCa -3'
miRNA:   3'- -GGUCGu-------CuuCUUCUGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 114268 0.69 0.990175
Target:  5'- aCCAGgCAGAAGAGGagaggguugcaGCCggUGCCcggCCg -3'
miRNA:   3'- -GGUC-GUCUUCUUC-----------UGGuaGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 115352 0.67 0.995755
Target:  5'- aCAGCAcAGGAGGucACgCGUCGCUggCCa -3'
miRNA:   3'- gGUCGUcUUCUUC--UG-GUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 115671 0.67 0.99736
Target:  5'- gCGGguGAAGAAGgcgGCCAggcggaacaGCCggugUCCg -3'
miRNA:   3'- gGUCguCUUCUUC---UGGUag-------CGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 115922 0.66 0.998367
Target:  5'- gCGGUAGAGGuGAGGCCAguacgguuggggCGUCUUgCg -3'
miRNA:   3'- gGUCGUCUUC-UUCUGGUa-----------GCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 116194 0.7 0.972668
Target:  5'- gCCGcGgAGAGGAGGGagaCGUCGCCgucgCCg -3'
miRNA:   3'- -GGU-CgUCUUCUUCUg--GUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 116285 0.67 0.996893
Target:  5'- -uGGCuGggGggGACCuuUCGUccccuuCUUCCu -3'
miRNA:   3'- ggUCGuCuuCuuCUGGu-AGCG------GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 116765 0.7 0.980014
Target:  5'- cCCAgGCAGAAG-AGGCCGUcacggaCGCuCUUCa -3'
miRNA:   3'- -GGU-CGUCUUCuUCUGGUA------GCG-GAAGg -5'
13958 3' -50.9 NC_003521.1 + 117906 0.69 0.988848
Target:  5'- gCGGCGGcGGggGACCGUagGCCgcauacggcgCCg -3'
miRNA:   3'- gGUCGUCuUCuuCUGGUAg-CGGaa--------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.