miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 120422 0.66 0.99812
Target:  5'- aCAGguGAAGAGGAggacaCCGaugcUCGCg-UCCg -3'
miRNA:   3'- gGUCguCUUCUUCU-----GGU----AGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 120854 0.7 0.972668
Target:  5'- aCCGGCAGGAGccGGCggccgcgccgugCAUCGCCUcgacacCCa -3'
miRNA:   3'- -GGUCGUCUUCuuCUG------------GUAGCGGAa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 122463 0.68 0.994296
Target:  5'- gCAGCAuGGAGucgcGAGGgCGUCGCCagCCc -3'
miRNA:   3'- gGUCGU-CUUC----UUCUgGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 123495 0.66 0.998425
Target:  5'- gCCGGCGGGGuGucG-UCGUCGCCgcugCCg -3'
miRNA:   3'- -GGUCGUCUU-CuuCuGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 123788 0.67 0.995755
Target:  5'- aCCAcGCAGAGGAu-GCCucguUCGCggUCCu -3'
miRNA:   3'- -GGU-CGUCUUCUucUGGu---AGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 123945 0.68 0.992457
Target:  5'- aCCAGCAGcuggcgcAGAuGGCCAUCGUgcgCCu -3'
miRNA:   3'- -GGUCGUCu------UCUuCUGGUAGCGgaaGG- -5'
13958 3' -50.9 NC_003521.1 + 124439 0.68 0.995069
Target:  5'- gCCGGCAGgcGcacAGGcGCUAUCGCCUgcaCg -3'
miRNA:   3'- -GGUCGUCuuC---UUC-UGGUAGCGGAag-G- -5'
13958 3' -50.9 NC_003521.1 + 124947 0.66 0.999101
Target:  5'- aCCAGCua---AAGACCAUCaCCUaCCg -3'
miRNA:   3'- -GGUCGucuucUUCUGGUAGcGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 127107 0.68 0.994296
Target:  5'- gCGGUAGAAGAGGuccACCAgcagCGUCUUg- -3'
miRNA:   3'- gGUCGUCUUCUUC---UGGUa---GCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 127585 0.67 0.99636
Target:  5'- aCCGGCAGccGcuGACCAaCGCCa--- -3'
miRNA:   3'- -GGUCGUCuuCuuCUGGUaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 128048 0.66 0.999262
Target:  5'- gCGGUAGAAGu-GGCCGacgCGCCgcgcgaugCCg -3'
miRNA:   3'- gGUCGUCUUCuuCUGGUa--GCGGaa------GG- -5'
13958 3' -50.9 NC_003521.1 + 128869 0.71 0.966794
Target:  5'- cUCAGCcccGAGAAcgccgugacGGCCAUCGCCUaCCa -3'
miRNA:   3'- -GGUCGuc-UUCUU---------CUGGUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 129130 0.66 0.998425
Target:  5'- -aAGCAGAAGcugcuGGCCA-CGCUgUUCCu -3'
miRNA:   3'- ggUCGUCUUCuu---CUGGUaGCGG-AAGG- -5'
13958 3' -50.9 NC_003521.1 + 129837 0.66 0.999101
Target:  5'- gCGGCGcGgcGGAGcaGCCAUCGUCgggCCc -3'
miRNA:   3'- gGUCGU-CuuCUUC--UGGUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 129964 0.7 0.977751
Target:  5'- gCCGGCAGAAGcGGGCguccUCGCCcgUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGgu--AGCGGa-AGg -5'
13958 3' -50.9 NC_003521.1 + 130366 0.69 0.990175
Target:  5'- -gGGCAGAAGAGGcCCGgcaGCUggcagUUCCa -3'
miRNA:   3'- ggUCGUCUUCUUCuGGUag-CGG-----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 131265 0.66 0.998687
Target:  5'- gCGGCAcGGAGAuGGCCA-CGUCgugacUCCg -3'
miRNA:   3'- gGUCGU-CUUCUuCUGGUaGCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 133061 0.69 0.985779
Target:  5'- uCCAGCAGcAGcAGucacaGCCAUCGCag-CCg -3'
miRNA:   3'- -GGUCGUCuUCuUC-----UGGUAGCGgaaGG- -5'
13958 3' -50.9 NC_003521.1 + 133505 0.67 0.996893
Target:  5'- --cGUAGAGGAGGucguccucgaccGCCAUCGCC--CCu -3'
miRNA:   3'- gguCGUCUUCUUC------------UGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 134996 0.73 0.929447
Target:  5'- gUAGCAGggGcAGGCCGuggcgUCGcCCUUCUc -3'
miRNA:   3'- gGUCGUCuuCuUCUGGU-----AGC-GGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.