miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 196321 0.67 0.99636
Target:  5'- aCC-GCGGAAGgcGGCCggUGCUggCCc -3'
miRNA:   3'- -GGuCGUCUUCuuCUGGuaGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 196046 0.66 0.999262
Target:  5'- gUCGGCcuAGGGccAGcACCGgcCGCCUUCCg -3'
miRNA:   3'- -GGUCGucUUCU--UC-UGGUa-GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 195994 0.67 0.99636
Target:  5'- aCCAGCcccAGGAGcuguGGCgUGUCGCCcUCCg -3'
miRNA:   3'- -GGUCG---UCUUCuu--CUG-GUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 193518 0.7 0.9819
Target:  5'- aCAGCGGcuGAGAcgacggaucggacGGACCuUCGCCgggaUCCu -3'
miRNA:   3'- gGUCGUC--UUCU-------------UCUGGuAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 192904 0.7 0.977751
Target:  5'- aUCAGCAGcgcGAAGGCCGUCaggGCCaUCa -3'
miRNA:   3'- -GGUCGUCuu-CUUCUGGUAG---CGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 188106 0.67 0.996893
Target:  5'- --cGguGAGGAAGGCCGUcCGCaacgCCc -3'
miRNA:   3'- gguCguCUUCUUCUGGUA-GCGgaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 187721 0.66 0.998687
Target:  5'- gCCAGCGGuacguGACuugucuCAUCGCCacgUCCa -3'
miRNA:   3'- -GGUCGUCuucuuCUG------GUAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 186532 0.72 0.943073
Target:  5'- gCCAGCGGggGcuccgugggaggcAGGGCCGgcacgaacuUCGCCUgcuugucUCCa -3'
miRNA:   3'- -GGUCGUCuuC-------------UUCUGGU---------AGCGGA-------AGG- -5'
13958 3' -50.9 NC_003521.1 + 186362 0.67 0.997767
Target:  5'- gCGGCAGgcGucGAuaaCCAUCGCC--CCg -3'
miRNA:   3'- gGUCGUCuuCuuCU---GGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 185507 0.67 0.995755
Target:  5'- uCUGGCAGAAGAacAGugUGUUGUgcuUUUCCa -3'
miRNA:   3'- -GGUCGUCUUCU--UCugGUAGCG---GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 181756 0.66 0.998338
Target:  5'- gCAGaucaccaGGGAGAAGGCCcacagcgcccgguaGUCGCgaUCCu -3'
miRNA:   3'- gGUCg------UCUUCUUCUGG--------------UAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 180111 0.7 0.982101
Target:  5'- aCAGCGucuGGGAG-CCGUCGUCgucgUCCa -3'
miRNA:   3'- gGUCGUcu-UCUUCuGGUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 175838 0.7 0.982101
Target:  5'- gCCAGCAGAGGGAGACauaaGUacaCCa -3'
miRNA:   3'- -GGUCGUCUUCUUCUGguagCGgaaGG- -5'
13958 3' -50.9 NC_003521.1 + 174016 0.7 0.975305
Target:  5'- -aGGUAGAGGAGGAgCAgcaGCCUgCCu -3'
miRNA:   3'- ggUCGUCUUCUUCUgGUag-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 173166 0.66 0.998425
Target:  5'- cCCAGaAGGAcGAGGACagcucuuccUCGUCUUCCu -3'
miRNA:   3'- -GGUCgUCUU-CUUCUGgu-------AGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 173075 0.69 0.985779
Target:  5'- gCAGCAGAAGAcuGGACC--UGCCg--- -3'
miRNA:   3'- gGUCGUCUUCU--UCUGGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 172963 0.67 0.995755
Target:  5'- aCGGUguaGGAGGggGuucauCCGggcCGCCUUCUg -3'
miRNA:   3'- gGUCG---UCUUCuuCu----GGUa--GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 172807 0.7 0.9819
Target:  5'- cCCAGCAuccaccaggugcuGGAGGAGGCCAUCaaGUCgugcaacUCCa -3'
miRNA:   3'- -GGUCGU-------------CUUCUUCUGGUAG--CGGa------AGG- -5'
13958 3' -50.9 NC_003521.1 + 167744 0.69 0.985779
Target:  5'- uCCGGCcc--GAcGACCGUCagGCCUUCCc -3'
miRNA:   3'- -GGUCGucuuCUuCUGGUAG--CGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 166871 0.69 0.985779
Target:  5'- aCAGCAGcAGcAGGCCGUCGgCg-CCg -3'
miRNA:   3'- gGUCGUCuUCuUCUGGUAGCgGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.