miRNA display CGI


Results 61 - 80 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 166725 0.75 0.855042
Target:  5'- gCCAGCuaucauccuuggcGggGAAGACC-UCGCCcgCCa -3'
miRNA:   3'- -GGUCGu------------CuuCUUCUGGuAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 166441 0.66 0.999101
Target:  5'- aCguGUAGAucGAGGgcgaGCCGUCGCCgcacuggCCg -3'
miRNA:   3'- -GguCGUCUu-CUUC----UGGUAGCGGaa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 165009 0.74 0.873124
Target:  5'- cCCAGCG--AGGAGGCCGcgaUCGCCgcggcUUCCa -3'
miRNA:   3'- -GGUCGUcuUCUUCUGGU---AGCGG-----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 164739 0.74 0.900475
Target:  5'- aCCAGCgcGGGAGggGGgCAUCGCggUCg -3'
miRNA:   3'- -GGUCG--UCUUCuuCUgGUAGCGgaAGg -5'
13958 3' -50.9 NC_003521.1 + 164340 0.67 0.995755
Target:  5'- -aGGCAuGAcgacgaccuccgAGgcGACCGUCGCCguggCCg -3'
miRNA:   3'- ggUCGU-CU------------UCuuCUGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 163970 0.66 0.999101
Target:  5'- --cGCcGAAGAuGGCgGUCGCCgggCCu -3'
miRNA:   3'- gguCGuCUUCUuCUGgUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 162836 0.72 0.952486
Target:  5'- gCCGGCAGAGcgcuGAAGcCCGUCGCagacUCUa -3'
miRNA:   3'- -GGUCGUCUU----CUUCuGGUAGCGga--AGG- -5'
13958 3' -50.9 NC_003521.1 + 161058 0.71 0.960081
Target:  5'- -aAGUAGAcGAAGACCcgCGCCcgcgugCCg -3'
miRNA:   3'- ggUCGUCUuCUUCUGGuaGCGGaa----GG- -5'
13958 3' -50.9 NC_003521.1 + 160522 0.66 0.998911
Target:  5'- aCCAGgcaaccCGGGAGAAGcGCgCG-CGCCUUUCa -3'
miRNA:   3'- -GGUC------GUCUUCUUC-UG-GUaGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 157259 0.66 0.998425
Target:  5'- -gAGCAaGAGAc--CCGUCGCCUuUCCg -3'
miRNA:   3'- ggUCGUcUUCUucuGGUAGCGGA-AGG- -5'
13958 3' -50.9 NC_003521.1 + 157259 0.74 0.893976
Target:  5'- -aAGUcGGAGGAGACCGUCGCgaUCUc -3'
miRNA:   3'- ggUCGuCUUCUUCUGGUAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 156373 0.66 0.998847
Target:  5'- aCgGGCgAGAAGGAGACgcgggcacugccguCGUCGUCUUgCu -3'
miRNA:   3'- -GgUCG-UCUUCUUCUG--------------GUAGCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 155669 0.71 0.960081
Target:  5'- gCGGCGGAGGucuGGACgauuCAUCGCCg-CCg -3'
miRNA:   3'- gGUCGUCUUCu--UCUG----GUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 153325 0.7 0.972668
Target:  5'- cCCGGCGGcgGAGGAGGCCugggggcCGCCUcgUCg -3'
miRNA:   3'- -GGUCGUC--UUCUUCUGGua-----GCGGA--AGg -5'
13958 3' -50.9 NC_003521.1 + 152863 0.7 0.975305
Target:  5'- aCCAGgGcgccGAGGAGGCCAUCGUgUacUCCa -3'
miRNA:   3'- -GGUCgUc---UUCUUCUGGUAGCGgA--AGG- -5'
13958 3' -50.9 NC_003521.1 + 151978 0.71 0.969833
Target:  5'- cCCGcCAGGAcGAGGACCA-CGUCUUCa -3'
miRNA:   3'- -GGUcGUCUU-CUUCUGGUaGCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 151795 0.7 0.972668
Target:  5'- aCAGCAuGAAGguGGCCGgcaCGUgUUCCa -3'
miRNA:   3'- gGUCGU-CUUCuuCUGGUa--GCGgAAGG- -5'
13958 3' -50.9 NC_003521.1 + 151651 0.66 0.998425
Target:  5'- uCCAGCAGGGccAGGCCcacggcccaGCCgUCCa -3'
miRNA:   3'- -GGUCGUCUUcuUCUGGuag------CGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 150938 0.66 0.998425
Target:  5'- cCCAGCAGcAGcGGcGCCGcCGCCggagagCCg -3'
miRNA:   3'- -GGUCGUCuUCuUC-UGGUaGCGGaa----GG- -5'
13958 3' -50.9 NC_003521.1 + 150846 0.68 0.994296
Target:  5'- aUAGUgaGGAGGAGGAgCcgCGCCgccgCCg -3'
miRNA:   3'- gGUCG--UCUUCUUCUgGuaGCGGaa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.