miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 150476 0.68 0.994996
Target:  5'- cCCAGCAGGcuguggaccugccAGAAGGCC--CGCCg--- -3'
miRNA:   3'- -GGUCGUCU-------------UCUUCUGGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 149195 0.69 0.988848
Target:  5'- aCCGGCGGccacGAGGACUA-CGCCacCCa -3'
miRNA:   3'- -GGUCGUCuu--CUUCUGGUaGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 149090 0.68 0.991822
Target:  5'- cUCGGCcGAGGGcAGGCgGUCGCCgcgcacgaugaacgUCCg -3'
miRNA:   3'- -GGUCGuCUUCU-UCUGgUAGCGGa-------------AGG- -5'
13958 3' -50.9 NC_003521.1 + 148024 0.66 0.998425
Target:  5'- aCAGgauaaAGAGGAAGGCCGUCagGCUgucgCCc -3'
miRNA:   3'- gGUCg----UCUUCUUCUGGUAG--CGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 147083 0.67 0.996893
Target:  5'- cCCAGaCAGgcGGAGcGCuCGUCGUCcaggUCCg -3'
miRNA:   3'- -GGUC-GUCuuCUUC-UG-GUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 146456 0.68 0.995069
Target:  5'- --cGCAGuuGAAgGGCCGUCcGCCggCCa -3'
miRNA:   3'- gguCGUCuuCUU-CUGGUAG-CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 144489 0.66 0.998687
Target:  5'- aCCuGC-GAGGAGGACCuggaCGCCgaCUg -3'
miRNA:   3'- -GGuCGuCUUCUUCUGGua--GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 143865 0.67 0.99736
Target:  5'- gCAGCAGccGguGGCCGUCaGCagUCCg -3'
miRNA:   3'- gGUCGUCuuCuuCUGGUAG-CGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 141989 0.72 0.93937
Target:  5'- gCAGCGGGAGcuGGCCcgCGCCa--- -3'
miRNA:   3'- gGUCGUCUUCuuCUGGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 141578 0.74 0.900475
Target:  5'- -aAGCAGAAGAGGGCUccggggCGCCgcCCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 141015 0.66 0.999101
Target:  5'- cCCAGCAcguGGAGGCCGUacugCGCCa--- -3'
miRNA:   3'- -GGUCGUcuuCUUCUGGUA----GCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 139122 0.66 0.99812
Target:  5'- uCCAcGCAGAAGGugcAGcCCAUCugGCCgcaggCCg -3'
miRNA:   3'- -GGU-CGUCUUCU---UCuGGUAG--CGGaa---GG- -5'
13958 3' -50.9 NC_003521.1 + 138348 0.73 0.906742
Target:  5'- cUCGGCcuGGGAGGGCCAgCGCCUcagcugUCCg -3'
miRNA:   3'- -GGUCGucUUCUUCUGGUaGCGGA------AGG- -5'
13958 3' -50.9 NC_003521.1 + 137330 0.67 0.99736
Target:  5'- -uGGCGGAAGAcagcagGGGCCGggcggUGCCUgagucagCCg -3'
miRNA:   3'- ggUCGUCUUCU------UCUGGUa----GCGGAa------GG- -5'
13958 3' -50.9 NC_003521.1 + 136998 0.66 0.998425
Target:  5'- gCGGCAGGacgcGGAAGGCgGcgCGCUgccagUCCu -3'
miRNA:   3'- gGUCGUCU----UCUUCUGgUa-GCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 136704 0.67 0.997728
Target:  5'- cCCgAGCAGGAcgccgccGAGGAUggCAgcgcgcCGCCUUCCg -3'
miRNA:   3'- -GG-UCGUCUU-------CUUCUG--GUa-----GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 134996 0.73 0.929447
Target:  5'- gUAGCAGggGcAGGCCGuggcgUCGcCCUUCUc -3'
miRNA:   3'- gGUCGUCuuCuUCUGGU-----AGC-GGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 133505 0.67 0.996893
Target:  5'- --cGUAGAGGAGGucguccucgaccGCCAUCGCC--CCu -3'
miRNA:   3'- gguCGUCUUCUUC------------UGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 133061 0.69 0.985779
Target:  5'- uCCAGCAGcAGcAGucacaGCCAUCGCag-CCg -3'
miRNA:   3'- -GGUCGUCuUCuUC-----UGGUAGCGgaaGG- -5'
13958 3' -50.9 NC_003521.1 + 131265 0.66 0.998687
Target:  5'- gCGGCAcGGAGAuGGCCA-CGUCgugacUCCg -3'
miRNA:   3'- gGUCGU-CUUCUuCUGGUaGCGGa----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.