miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 58083 0.73 0.912774
Target:  5'- gCAGCAGAGGAgAGuCC-UCGCCUUg- -3'
miRNA:   3'- gGUCGUCUUCU-UCuGGuAGCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 239845 0.74 0.900475
Target:  5'- cCCAGCGGGAGcAGACCGcCgGCCUcUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGGUaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 164739 0.74 0.900475
Target:  5'- aCCAGCgcGGGAGggGGgCAUCGCggUCg -3'
miRNA:   3'- -GGUCG--UCUUCuuCUgGUAGCGgaAGg -5'
13958 3' -50.9 NC_003521.1 + 165009 0.74 0.873124
Target:  5'- cCCAGCG--AGGAGGCCGcgaUCGCCgcggcUUCCa -3'
miRNA:   3'- -GGUCGUcuUCUUCUGGU---AGCGG-----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 166725 0.75 0.855042
Target:  5'- gCCAGCuaucauccuuggcGggGAAGACC-UCGCCcgCCa -3'
miRNA:   3'- -GGUCGu------------CuuCUUCUGGuAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 36783 0.71 0.956396
Target:  5'- cCUGGCGGGcguGGAGGACg--CGCCUUUCg -3'
miRNA:   3'- -GGUCGUCU---UCUUCUGguaGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 29775 0.71 0.960081
Target:  5'- -gAGCAGGAGGcucgGGACCcaguUCGCCUUa- -3'
miRNA:   3'- ggUCGUCUUCU----UCUGGu---AGCGGAAgg -5'
13958 3' -50.9 NC_003521.1 + 180111 0.7 0.982101
Target:  5'- aCAGCGucuGGGAG-CCGUCGUCgucgUCCa -3'
miRNA:   3'- gGUCGUcu-UCUUCuGGUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 193518 0.7 0.9819
Target:  5'- aCAGCGGcuGAGAcgacggaucggacGGACCuUCGCCgggaUCCu -3'
miRNA:   3'- gGUCGUC--UUCU-------------UCUGGuAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 101865 0.7 0.980014
Target:  5'- gCGGCGGuacauGAAGuaGCCGUCGuCCUggUCCa -3'
miRNA:   3'- gGUCGUCuu---CUUC--UGGUAGC-GGA--AGG- -5'
13958 3' -50.9 NC_003521.1 + 192904 0.7 0.977751
Target:  5'- aUCAGCAGcgcGAAGGCCGUCaggGCCaUCa -3'
miRNA:   3'- -GGUCGUCuu-CUUCUGGUAG---CGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 43075 0.7 0.977751
Target:  5'- gCAcCAGGAGAAGAUCGUgGCCUa-- -3'
miRNA:   3'- gGUcGUCUUCUUCUGGUAgCGGAagg -5'
13958 3' -50.9 NC_003521.1 + 4306 0.7 0.977515
Target:  5'- -aGGCAGAGGGAcggccgggggcucGACCGUCcauGCCUggcgCCa -3'
miRNA:   3'- ggUCGUCUUCUU-------------CUGGUAG---CGGAa---GG- -5'
13958 3' -50.9 NC_003521.1 + 151795 0.7 0.972668
Target:  5'- aCAGCAuGAAGguGGCCGgcaCGUgUUCCa -3'
miRNA:   3'- gGUCGU-CUUCuuCUGGUa--GCGgAAGG- -5'
13958 3' -50.9 NC_003521.1 + 116194 0.7 0.972668
Target:  5'- gCCGcGgAGAGGAGGGagaCGUCGCCgucgCCg -3'
miRNA:   3'- -GGU-CgUCUUCUUCUg--GUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 67475 0.71 0.969833
Target:  5'- aCCAGguGAA--GGGCU-UCGCCUUCg -3'
miRNA:   3'- -GGUCguCUUcuUCUGGuAGCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 41027 0.71 0.966794
Target:  5'- aCCAGaCGG-AGAcgcugcAGGCCAUCcguaccaccgaaGCCUUCCu -3'
miRNA:   3'- -GGUC-GUCuUCU------UCUGGUAG------------CGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 214281 0.71 0.966794
Target:  5'- gCUGGUAGGAGGAGGCCAggaUGCCcaucaCCa -3'
miRNA:   3'- -GGUCGUCUUCUUCUGGUa--GCGGaa---GG- -5'
13958 3' -50.9 NC_003521.1 + 155669 0.71 0.960081
Target:  5'- gCGGCGGAGGucuGGACgauuCAUCGCCg-CCg -3'
miRNA:   3'- gGUCGUCUUCu--UCUG----GUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 39953 0.71 0.960081
Target:  5'- uCCAGCAGcguaucGGAGGA--AUCGCCgUCCg -3'
miRNA:   3'- -GGUCGUCu-----UCUUCUggUAGCGGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.