miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 216435 0.69 0.990049
Target:  5'- gCAGCAccuucgcGggGAAGACCAgagcgaaGCCgcCCa -3'
miRNA:   3'- gGUCGU-------CuuCUUCUGGUag-----CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 5657 0.68 0.991376
Target:  5'- gCGGCGGAGGGuggggggucgAGACaCGggCGCCcgUCCg -3'
miRNA:   3'- gGUCGUCUUCU----------UCUG-GUa-GCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 32787 0.68 0.991376
Target:  5'- aCGGC-GA--GAGACCcgCGCCcUCCa -3'
miRNA:   3'- gGUCGuCUucUUCUGGuaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 32852 0.68 0.992457
Target:  5'- aCCGGCAGGgucuGGAGGCCGaucgguuuggCGCCcgcgCCg -3'
miRNA:   3'- -GGUCGUCUu---CUUCUGGUa---------GCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 64950 0.68 0.993428
Target:  5'- -uGGCAGGAGGAGGCCGagaaGCUg-CCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGUag--CGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 57736 0.68 0.993428
Target:  5'- --cGCAGAAGAGaucGCCGUCGCCc--- -3'
miRNA:   3'- gguCGUCUUCUUc--UGGUAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 71120 0.68 0.993428
Target:  5'- -uGGgGGAcgucGGggGACuCGUCGCCgccUCCu -3'
miRNA:   3'- ggUCgUCU----UCuuCUG-GUAGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 201013 0.69 0.987385
Target:  5'- aUCGGCGGAGGAccGCCcggCGCCccgCCg -3'
miRNA:   3'- -GGUCGUCUUCUucUGGua-GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 73633 0.69 0.987385
Target:  5'- gCCAGCccaAGcAGAAGGCCucCGCCgcggCCg -3'
miRNA:   3'- -GGUCG---UCuUCUUCUGGuaGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 173075 0.69 0.985779
Target:  5'- gCAGCAGAAGAcuGGACC--UGCCg--- -3'
miRNA:   3'- gGUCGUCUUCU--UCUGGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 193518 0.7 0.9819
Target:  5'- aCAGCGGcuGAGAcgacggaucggacGGACCuUCGCCgggaUCCu -3'
miRNA:   3'- gGUCGUC--UUCU-------------UCUGGuAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 180111 0.7 0.982101
Target:  5'- aCAGCGucuGGGAG-CCGUCGUCgucgUCCa -3'
miRNA:   3'- gGUCGUcu-UCUUCuGGUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 231783 0.7 0.982888
Target:  5'- cCCuGCAGAAGAcgcucauucucacggAGuCCGUgGCUUUCUg -3'
miRNA:   3'- -GGuCGUCUUCU---------------UCuGGUAgCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 87393 0.69 0.983462
Target:  5'- gCGGCGGAGgugacgccGAcgcucacgcccaggGGAUCGUCGCCUUUCc -3'
miRNA:   3'- gGUCGUCUU--------CU--------------UCUGGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 17208 0.69 0.98402
Target:  5'- -uGGCGaGAGAAGAgCGUCGCCgUCg -3'
miRNA:   3'- ggUCGUcUUCUUCUgGUAGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 209506 0.69 0.98402
Target:  5'- uCCucGUGGggGGucacgguGACCGUCGCCgcugCCg -3'
miRNA:   3'- -GGu-CGUCuuCUu------CUGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 21099 0.69 0.985779
Target:  5'- gCCAau-GGAGAgauAGACCGUUGCCU-CCg -3'
miRNA:   3'- -GGUcguCUUCU---UCUGGUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 70417 0.69 0.985779
Target:  5'- -aAGCGcAGGAAGGCCAccgUCGCCgaaaCCg -3'
miRNA:   3'- ggUCGUcUUCUUCUGGU---AGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 133061 0.69 0.985779
Target:  5'- uCCAGCAGcAGcAGucacaGCCAUCGCag-CCg -3'
miRNA:   3'- -GGUCGUCuUCuUC-----UGGUAGCGgaaGG- -5'
13958 3' -50.9 NC_003521.1 + 225554 0.68 0.993428
Target:  5'- aCCAggcaguGCAGAcGggGACCcgUGUCgUCCu -3'
miRNA:   3'- -GGU------CGUCUuCuuCUGGuaGCGGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.