miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 17208 0.69 0.98402
Target:  5'- -uGGCGaGAGAAGAgCGUCGCCgUCg -3'
miRNA:   3'- ggUCGUcUUCUUCUgGUAGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 209506 0.69 0.98402
Target:  5'- uCCucGUGGggGGucacgguGACCGUCGCCgcugCCg -3'
miRNA:   3'- -GGu-CGUCuuCUu------CUGGUAGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 21099 0.69 0.985779
Target:  5'- gCCAau-GGAGAgauAGACCGUUGCCU-CCg -3'
miRNA:   3'- -GGUcguCUUCU---UCUGGUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 70417 0.69 0.985779
Target:  5'- -aAGCGcAGGAAGGCCAccgUCGCCgaaaCCg -3'
miRNA:   3'- ggUCGUcUUCUUCUGGU---AGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 133061 0.69 0.985779
Target:  5'- uCCAGCAGcAGcAGucacaGCCAUCGCag-CCg -3'
miRNA:   3'- -GGUCGUCuUCuUC-----UGGUAGCGgaaGG- -5'
13958 3' -50.9 NC_003521.1 + 81443 0.69 0.988848
Target:  5'- gCCGGUGGucucGAAGACC-UCGaCCUUaCCg -3'
miRNA:   3'- -GGUCGUCuu--CUUCUGGuAGC-GGAA-GG- -5'
13958 3' -50.9 NC_003521.1 + 33656 0.69 0.988848
Target:  5'- gCCAGCAGAGcGGGAuCCAgCGaCCggCCg -3'
miRNA:   3'- -GGUCGUCUUcUUCU-GGUaGC-GGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 201013 0.69 0.987385
Target:  5'- aUCGGCGGAGGAccGCCcggCGCCccgCCg -3'
miRNA:   3'- -GGUCGUCUUCUucUGGua-GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 73633 0.69 0.987385
Target:  5'- gCCAGCccaAGcAGAAGGCCucCGCCgcggCCg -3'
miRNA:   3'- -GGUCG---UCuUCUUCUGGuaGCGGaa--GG- -5'
13958 3' -50.9 NC_003521.1 + 173075 0.69 0.985779
Target:  5'- gCAGCAGAAGAcuGGACC--UGCCg--- -3'
miRNA:   3'- gGUCGUCUUCU--UCUGGuaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 196970 0.73 0.91857
Target:  5'- gCCGGU-GAAGucGGCCGUCGCUgcUCCu -3'
miRNA:   3'- -GGUCGuCUUCuuCUGGUAGCGGa-AGG- -5'
13958 3' -50.9 NC_003521.1 + 19727 0.73 0.906742
Target:  5'- gCGGUAGAGGAGGGguccUCGUCGUCcUCCu -3'
miRNA:   3'- gGUCGUCUUCUUCU----GGUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 138348 0.73 0.906742
Target:  5'- cUCGGCcuGGGAGGGCCAgCGCCUcagcugUCCg -3'
miRNA:   3'- -GGUCGucUUCUUCUGGUaGCGGA------AGG- -5'
13958 3' -50.9 NC_003521.1 + 201470 0.74 0.900475
Target:  5'- cCCAGCGGGAGcAGACCGcCgGCCUcUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGGUaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 141578 0.74 0.900475
Target:  5'- -aAGCAGAAGAGGGCUccggggCGCCgcCCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 157259 0.74 0.893976
Target:  5'- -aAGUcGGAGGAGACCGUCGCgaUCUc -3'
miRNA:   3'- ggUCGuCUUCUUCUGGUAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 103228 0.74 0.887249
Target:  5'- cCCAGCuacuGAGGAaacuGGACCAgaucaacCGCCUgUCCg -3'
miRNA:   3'- -GGUCGu---CUUCU----UCUGGUa------GCGGA-AGG- -5'
13958 3' -50.9 NC_003521.1 + 233096 0.75 0.842337
Target:  5'- gCGGCGGggGAGGuACCGgggcagCGCCguagcUCCa -3'
miRNA:   3'- gGUCGUCuuCUUC-UGGUa-----GCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 39832 0.76 0.829145
Target:  5'- gCCGGCAGGAcuccgaugcgaacucGGAGGggaucuCCAUCGCuCUUCCg -3'
miRNA:   3'- -GGUCGUCUU---------------CUUCU------GGUAGCG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 223271 0.66 0.999262
Target:  5'- aCCGGCGGAcGAcGACCcccacCGCCauaCCa -3'
miRNA:   3'- -GGUCGUCUuCUuCUGGua---GCGGaa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.