miRNA display CGI


Results 41 - 60 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 55461 0.69 0.985779
Target:  5'- gCCGGCGGAcu---GCCAUCGCCggUCg -3'
miRNA:   3'- -GGUCGUCUucuucUGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 128869 0.71 0.966794
Target:  5'- cUCAGCcccGAGAAcgccgugacGGCCAUCGCCUaCCa -3'
miRNA:   3'- -GGUCGuc-UUCUU---------CUGGUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 233096 0.75 0.842337
Target:  5'- gCGGCGGggGAGGuACCGgggcagCGCCguagcUCCa -3'
miRNA:   3'- gGUCGUCuuCUUC-UGGUa-----GCGGa----AGG- -5'
13958 3' -50.9 NC_003521.1 + 235594 0.69 0.98561
Target:  5'- cCCGGCAGAaacaccAGAGGcgguguaGCCGUCGCa-UCUg -3'
miRNA:   3'- -GGUCGUCU------UCUUC-------UGGUAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 39832 0.76 0.829145
Target:  5'- gCCGGCAGGAcuccgaugcgaacucGGAGGggaucuCCAUCGCuCUUCCg -3'
miRNA:   3'- -GGUCGUCUU---------------CUUCU------GGUAGCG-GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 35679 0.68 0.994296
Target:  5'- aCCcGCAGAcagcAGAAGGCCuucuGUCGCgCggCCc -3'
miRNA:   3'- -GGuCGUCU----UCUUCUGG----UAGCG-GaaGG- -5'
13958 3' -50.9 NC_003521.1 + 157259 0.74 0.893976
Target:  5'- -aAGUcGGAGGAGACCGUCGCgaUCUc -3'
miRNA:   3'- ggUCGuCUUCUUCUGGUAGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 122463 0.68 0.994296
Target:  5'- gCAGCAuGGAGucgcGAGGgCGUCGCCagCCc -3'
miRNA:   3'- gGUCGU-CUUC----UUCUgGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 5393 0.68 0.993428
Target:  5'- gCCAGCAaGAGAcgacGACCAUCGCa---- -3'
miRNA:   3'- -GGUCGUcUUCUu---CUGGUAGCGgaagg -5'
13958 3' -50.9 NC_003521.1 + 19759 0.68 0.991376
Target:  5'- aCAGCugagaGGAAGAAGGCUGcCGCUUUgCg -3'
miRNA:   3'- gGUCG-----UCUUCUUCUGGUaGCGGAAgG- -5'
13958 3' -50.9 NC_003521.1 + 130366 0.69 0.990175
Target:  5'- -gGGCAGAAGAGGcCCGgcaGCUggcagUUCCa -3'
miRNA:   3'- ggUCGUCUUCUUCuGGUag-CGG-----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 240302 0.69 0.987385
Target:  5'- aUCGGCGGAGGAccGCCcggCGCCccgCCg -3'
miRNA:   3'- -GGUCGUCUUCUucUGGua-GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 166871 0.69 0.985779
Target:  5'- aCAGCAGcAGcAGGCCGUCGgCg-CCg -3'
miRNA:   3'- gGUCGUCuUCuUCUGGUAGCgGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 116765 0.7 0.980014
Target:  5'- cCCAgGCAGAAG-AGGCCGUcacggaCGCuCUUCa -3'
miRNA:   3'- -GGU-CGUCUUCuUCUGGUA------GCG-GAAGg -5'
13958 3' -50.9 NC_003521.1 + 129964 0.7 0.977751
Target:  5'- gCCGGCAGAAGcGGGCguccUCGCCcgUCg -3'
miRNA:   3'- -GGUCGUCUUCuUCUGgu--AGCGGa-AGg -5'
13958 3' -50.9 NC_003521.1 + 174016 0.7 0.975305
Target:  5'- -aGGUAGAGGAGGAgCAgcaGCCUgCCu -3'
miRNA:   3'- ggUCGUCUUCUUCUgGUag-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 120854 0.7 0.972668
Target:  5'- aCCGGCAGGAGccGGCggccgcgccgugCAUCGCCUcgacacCCa -3'
miRNA:   3'- -GGUCGUCUUCuuCUG------------GUAGCGGAa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 161058 0.71 0.960081
Target:  5'- -aAGUAGAcGAAGACCcgCGCCcgcgugCCg -3'
miRNA:   3'- ggUCGUCUuCUUCUGGuaGCGGaa----GG- -5'
13958 3' -50.9 NC_003521.1 + 162836 0.72 0.952486
Target:  5'- gCCGGCAGAGcgcuGAAGcCCGUCGCagacUCUa -3'
miRNA:   3'- -GGUCGUCUU----CUUCuGGUAGCGga--AGG- -5'
13958 3' -50.9 NC_003521.1 + 138348 0.73 0.906742
Target:  5'- cUCGGCcuGGGAGGGCCAgCGCCUcagcugUCCg -3'
miRNA:   3'- -GGUCGucUUCUUCUGGUaGCGGA------AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.