miRNA display CGI


Results 61 - 80 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 166871 0.69 0.985779
Target:  5'- aCAGCAGcAGcAGGCCGUCGgCg-CCg -3'
miRNA:   3'- gGUCGUCuUCuUCUGGUAGCgGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 101323 0.69 0.988848
Target:  5'- aCGGCAGGAuccGGCCGUCGgCggCCg -3'
miRNA:   3'- gGUCGUCUUcuuCUGGUAGCgGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 141578 0.74 0.900475
Target:  5'- -aAGCAGAAGAGGGCUccggggCGCCgcCCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 19727 0.73 0.906742
Target:  5'- gCGGUAGAGGAGGGguccUCGUCGUCcUCCu -3'
miRNA:   3'- gGUCGUCUUCUUCU----GGUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 227183 0.72 0.952486
Target:  5'- cCCGGCGcGGAGggGGCCGcggaggccgCGCUggCCg -3'
miRNA:   3'- -GGUCGU-CUUCuuCUGGUa--------GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 17388 0.71 0.960437
Target:  5'- gCCGGCAGGAucGAcGACC-UCGCCggguacgacggcgggUCCg -3'
miRNA:   3'- -GGUCGUCUU--CUuCUGGuAGCGGa--------------AGG- -5'
13958 3' -50.9 NC_003521.1 + 80552 0.7 0.972668
Target:  5'- aCCAGCAcGucGGAcgcGCCGUCGUCUUCg -3'
miRNA:   3'- -GGUCGU-CuuCUUc--UGGUAGCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 152863 0.7 0.975305
Target:  5'- aCCAGgGcgccGAGGAGGCCAUCGUgUacUCCa -3'
miRNA:   3'- -GGUCgUc---UUCUUCUGGUAGCGgA--AGG- -5'
13958 3' -50.9 NC_003521.1 + 222311 0.7 0.980014
Target:  5'- aCCAcGCAGGcgguGGAGGGCCAgcgcUGCUUUCg -3'
miRNA:   3'- -GGU-CGUCU----UCUUCUGGUa---GCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 172807 0.7 0.9819
Target:  5'- cCCAGCAuccaccaggugcuGGAGGAGGCCAUCaaGUCgugcaacUCCa -3'
miRNA:   3'- -GGUCGU-------------CUUCUUCUGGUAG--CGGa------AGG- -5'
13958 3' -50.9 NC_003521.1 + 45235 0.67 0.99736
Target:  5'- gCGGCAGGGuucGggGAUCgcgguGUCGCCgcccUUCCu -3'
miRNA:   3'- gGUCGUCUU---CuuCUGG-----UAGCGG----AAGG- -5'
13958 3' -50.9 NC_003521.1 + 143865 0.67 0.99736
Target:  5'- gCAGCAGccGguGGCCGUCaGCagUCCg -3'
miRNA:   3'- gGUCGUCuuCuuCUGGUAG-CGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 74134 0.68 0.991376
Target:  5'- uCgGGCGGggGGAGGCUcucGUCGCUg--- -3'
miRNA:   3'- -GgUCGUCuuCUUCUGG---UAGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 53056 0.68 0.992354
Target:  5'- uCCAGguGGAGccGcACCGcCGCCUggacaucUCCa -3'
miRNA:   3'- -GGUCguCUUCuuC-UGGUaGCGGA-------AGG- -5'
13958 3' -50.9 NC_003521.1 + 122463 0.68 0.994296
Target:  5'- gCAGCAuGGAGucgcGAGGgCGUCGCCagCCc -3'
miRNA:   3'- gGUCGU-CUUC----UUCUgGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 35679 0.68 0.994296
Target:  5'- aCCcGCAGAcagcAGAAGGCCuucuGUCGCgCggCCc -3'
miRNA:   3'- -GGuCGUCU----UCUUCUGG----UAGCG-GaaGG- -5'
13958 3' -50.9 NC_003521.1 + 101420 0.68 0.995069
Target:  5'- -gAGgAGAGGGacgcAGACCGcgccgCGCUUUCCg -3'
miRNA:   3'- ggUCgUCUUCU----UCUGGUa----GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 92456 0.67 0.995755
Target:  5'- -gGGCGGggGAggggAGGCCAgggcaUCGCC--CCg -3'
miRNA:   3'- ggUCGUCuuCU----UCUGGU-----AGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 127585 0.67 0.99636
Target:  5'- aCCGGCAGccGcuGACCAaCGCCa--- -3'
miRNA:   3'- -GGUCGUCuuCuuCUGGUaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 133505 0.67 0.996893
Target:  5'- --cGUAGAGGAGGucguccucgaccGCCAUCGCC--CCu -3'
miRNA:   3'- gguCGUCUUCUUC------------UGGUAGCGGaaGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.