miRNA display CGI


Results 81 - 100 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 149090 0.68 0.991822
Target:  5'- cUCGGCcGAGGGcAGGCgGUCGCCgcgcacgaugaacgUCCg -3'
miRNA:   3'- -GGUCGuCUUCU-UCUGgUAGCGGa-------------AGG- -5'
13958 3' -50.9 NC_003521.1 + 70693 0.68 0.993428
Target:  5'- uCCAcGCGGuuucGgcGACgGUgGCCUUCCu -3'
miRNA:   3'- -GGU-CGUCuu--CuuCUGgUAgCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 100265 0.68 0.994296
Target:  5'- --uGguGGAGAAGAUCuUCGCCgUCUu -3'
miRNA:   3'- gguCguCUUCUUCUGGuAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 124439 0.68 0.995069
Target:  5'- gCCGGCAGgcGcacAGGcGCUAUCGCCUgcaCg -3'
miRNA:   3'- -GGUCGUCuuC---UUC-UGGUAGCGGAag-G- -5'
13958 3' -50.9 NC_003521.1 + 26146 0.68 0.995069
Target:  5'- aCAGCGGGc--AGACCAUCGuCCUg-- -3'
miRNA:   3'- gGUCGUCUucuUCUGGUAGC-GGAagg -5'
13958 3' -50.9 NC_003521.1 + 127585 0.67 0.99636
Target:  5'- aCCGGCAGccGcuGACCAaCGCCa--- -3'
miRNA:   3'- -GGUCGUCuuCuuCUGGUaGCGGaagg -5'
13958 3' -50.9 NC_003521.1 + 133505 0.67 0.996893
Target:  5'- --cGUAGAGGAGGucguccucgaccGCCAUCGCC--CCu -3'
miRNA:   3'- gguCGUCUUCUUC------------UGGUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 172807 0.7 0.9819
Target:  5'- cCCAGCAuccaccaggugcuGGAGGAGGCCAUCaaGUCgugcaacUCCa -3'
miRNA:   3'- -GGUCGU-------------CUUCUUCUGGUAG--CGGa------AGG- -5'
13958 3' -50.9 NC_003521.1 + 222311 0.7 0.980014
Target:  5'- aCCAcGCAGGcgguGGAGGGCCAgcgcUGCUUUCg -3'
miRNA:   3'- -GGU-CGUCU----UCUUCUGGUa---GCGGAAGg -5'
13958 3' -50.9 NC_003521.1 + 152863 0.7 0.975305
Target:  5'- aCCAGgGcgccGAGGAGGCCAUCGUgUacUCCa -3'
miRNA:   3'- -GGUCgUc---UUCUUCUGGUAGCGgA--AGG- -5'
13958 3' -50.9 NC_003521.1 + 139122 0.66 0.99812
Target:  5'- uCCAcGCAGAAGGugcAGcCCAUCugGCCgcaggCCg -3'
miRNA:   3'- -GGU-CGUCUUCU---UCuGGUAG--CGGaa---GG- -5'
13958 3' -50.9 NC_003521.1 + 129130 0.66 0.998425
Target:  5'- -aAGCAGAAGcugcuGGCCA-CGCUgUUCCu -3'
miRNA:   3'- ggUCGUCUUCuu---CUGGUaGCGG-AAGG- -5'
13958 3' -50.9 NC_003521.1 + 36297 0.66 0.998453
Target:  5'- aCGGC-GAAGAGGGCCAagacggucguggggcCGCCaccUCCg -3'
miRNA:   3'- gGUCGuCUUCUUCUGGUa--------------GCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 50599 0.66 0.99889
Target:  5'- uCCAGCgcaaacgGGccGAGGACCcgCuGCCUcCCu -3'
miRNA:   3'- -GGUCG-------UCuuCUUCUGGuaG-CGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 77320 0.66 0.998911
Target:  5'- -gAGCAGAuggcccucaAGguGACCugcaaCGCCUUCUa -3'
miRNA:   3'- ggUCGUCU---------UCuuCUGGua---GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 141578 0.74 0.900475
Target:  5'- -aAGCAGAAGAGGGCUccggggCGCCgcCCg -3'
miRNA:   3'- ggUCGUCUUCUUCUGGua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 19727 0.73 0.906742
Target:  5'- gCGGUAGAGGAGGGguccUCGUCGUCcUCCu -3'
miRNA:   3'- gGUCGUCUUCUUCU----GGUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 227183 0.72 0.952486
Target:  5'- cCCGGCGcGGAGggGGCCGcggaggccgCGCUggCCg -3'
miRNA:   3'- -GGUCGU-CUUCuuCUGGUa--------GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 17388 0.71 0.960437
Target:  5'- gCCGGCAGGAucGAcGACC-UCGCCggguacgacggcgggUCCg -3'
miRNA:   3'- -GGUCGUCUU--CUuCUGGuAGCGGa--------------AGG- -5'
13958 3' -50.9 NC_003521.1 + 80552 0.7 0.972668
Target:  5'- aCCAGCAcGucGGAcgcGCCGUCGUCUUCg -3'
miRNA:   3'- -GGUCGU-CuuCUUc--UGGUAGCGGAAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.