miRNA display CGI


Results 101 - 120 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 240302 0.69 0.987385
Target:  5'- aUCGGCGGAGGAccGCCcggCGCCccgCCg -3'
miRNA:   3'- -GGUCGUCUUCUucUGGua-GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 227091 0.69 0.990175
Target:  5'- gCGGCGGgcGAGGACCccauggCGCUguaCCg -3'
miRNA:   3'- gGUCGUCuuCUUCUGGua----GCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 44940 0.67 0.99736
Target:  5'- gUAGCAGAAGuacAGGUCGUCGCagagCCg -3'
miRNA:   3'- gGUCGUCUUCu--UCUGGUAGCGgaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 94363 0.66 0.999262
Target:  5'- -aGGgGGGAGggGuuguuGCgCGUCGCCU-CCg -3'
miRNA:   3'- ggUCgUCUUCuuC-----UG-GUAGCGGAaGG- -5'
13958 3' -50.9 NC_003521.1 + 53056 0.68 0.992354
Target:  5'- uCCAGguGGAGccGcACCGcCGCCUggacaucUCCa -3'
miRNA:   3'- -GGUCguCUUCuuC-UGGUaGCGGA-------AGG- -5'
13958 3' -50.9 NC_003521.1 + 5393 0.68 0.993428
Target:  5'- gCCAGCAaGAGAcgacGACCAUCGCa---- -3'
miRNA:   3'- -GGUCGUcUUCUu---CUGGUAGCGgaagg -5'
13958 3' -50.9 NC_003521.1 + 115352 0.67 0.995755
Target:  5'- aCAGCAcAGGAGGucACgCGUCGCUggCCa -3'
miRNA:   3'- gGUCGUcUUCUUC--UG-GUAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 134996 0.73 0.929447
Target:  5'- gUAGCAGggGcAGGCCGuggcgUCGcCCUUCUc -3'
miRNA:   3'- gGUCGUCuuCuUCUGGU-----AGC-GGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 103191 0.67 0.996245
Target:  5'- uCCAGCgAGAAGuagcgcuccauGACCuggaugagGUCGCCggCCa -3'
miRNA:   3'- -GGUCG-UCUUCuu---------CUGG--------UAGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 104030 0.67 0.99569
Target:  5'- aCCAGCAGggGGuacacgcAGugcuCCGaCGCCgUCUg -3'
miRNA:   3'- -GGUCGUCuuCU-------UCu---GGUaGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 195994 0.67 0.99636
Target:  5'- aCCAGCcccAGGAGcuguGGCgUGUCGCCcUCCg -3'
miRNA:   3'- -GGUCG---UCUUCuu--CUG-GUAGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 172963 0.67 0.995755
Target:  5'- aCGGUguaGGAGGggGuucauCCGggcCGCCUUCUg -3'
miRNA:   3'- gGUCG---UCUUCuuCu----GGUa--GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 72407 0.67 0.995558
Target:  5'- aCCAGCggcggaggcacugaGGAAGAGGGCgAguccUCGCCgUCg -3'
miRNA:   3'- -GGUCG--------------UCUUCUUCUGgU----AGCGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 216139 0.72 0.952486
Target:  5'- gCGGCAGAGGAAGGCCAccugggCGCa---- -3'
miRNA:   3'- gGUCGUCUUCUUCUGGUa-----GCGgaagg -5'
13958 3' -50.9 NC_003521.1 + 123788 0.67 0.995755
Target:  5'- aCCAcGCAGAGGAu-GCCucguUCGCggUCCu -3'
miRNA:   3'- -GGU-CGUCUUCUucUGGu---AGCGgaAGG- -5'
13958 3' -50.9 NC_003521.1 + 185507 0.67 0.995755
Target:  5'- uCUGGCAGAAGAacAGugUGUUGUgcuUUUCCa -3'
miRNA:   3'- -GGUCGUCUUCU--UCugGUAGCG---GAAGG- -5'
13958 3' -50.9 NC_003521.1 + 193518 0.7 0.9819
Target:  5'- aCAGCGGcuGAGAcgacggaucggacGGACCuUCGCCgggaUCCu -3'
miRNA:   3'- gGUCGUC--UUCU-------------UCUGGuAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 180111 0.7 0.982101
Target:  5'- aCAGCGucuGGGAG-CCGUCGUCgucgUCCa -3'
miRNA:   3'- gGUCGUcu-UCUUCuGGUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 231783 0.7 0.982888
Target:  5'- cCCuGCAGAAGAcgcucauucucacggAGuCCGUgGCUUUCUg -3'
miRNA:   3'- -GGuCGUCUUCU---------------UCuGGUAgCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 87393 0.69 0.983462
Target:  5'- gCGGCGGAGgugacgccGAcgcucacgcccaggGGAUCGUCGCCUUUCc -3'
miRNA:   3'- gGUCGUCUU--------CU--------------UCUGGUAGCGGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.