miRNA display CGI


Results 121 - 140 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 3' -50.9 NC_003521.1 + 70864 0.66 0.999247
Target:  5'- cCCAGgAGGAGAGcaacgacGACaUAUCGCCacaCCa -3'
miRNA:   3'- -GGUCgUCUUCUU-------CUG-GUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 71454 0.68 0.994296
Target:  5'- --cGCGGggGAAGACaugCGCCcgCUg -3'
miRNA:   3'- gguCGUCuuCUUCUGguaGCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 70318 0.68 0.994296
Target:  5'- cCCAGCAGc--GAGGCgGUgaCGCCgUCCa -3'
miRNA:   3'- -GGUCGUCuucUUCUGgUA--GCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 20685 0.66 0.999101
Target:  5'- gCGGC-GAAGAAGACagcgaacCGCCcgCCa -3'
miRNA:   3'- gGUCGuCUUCUUCUGgua----GCGGaaGG- -5'
13958 3' -50.9 NC_003521.1 + 32156 0.66 0.999101
Target:  5'- gCGGCGGAAGgcG-CCcgCGUUgUUCCa -3'
miRNA:   3'- gGUCGUCUUCuuCuGGuaGCGG-AAGG- -5'
13958 3' -50.9 NC_003521.1 + 163970 0.66 0.999101
Target:  5'- --cGCcGAAGAuGGCgGUCGCCgggCCu -3'
miRNA:   3'- gguCGuCUUCUuCUGgUAGCGGaa-GG- -5'
13958 3' -50.9 NC_003521.1 + 166441 0.66 0.999101
Target:  5'- aCguGUAGAucGAGGgcgaGCCGUCGCCgcacuggCCg -3'
miRNA:   3'- -GguCGUCUu-CUUC----UGGUAGCGGaa-----GG- -5'
13958 3' -50.9 NC_003521.1 + 233725 0.66 0.999262
Target:  5'- gCCuGgAGAAGGAGgacGCCGcCGCCgcgUCUg -3'
miRNA:   3'- -GGuCgUCUUCUUC---UGGUaGCGGa--AGG- -5'
13958 3' -50.9 NC_003521.1 + 80594 0.66 0.999262
Target:  5'- gCGGCAGcGGGuuGACCAccUUGUCcUCCa -3'
miRNA:   3'- gGUCGUC-UUCuuCUGGU--AGCGGaAGG- -5'
13958 3' -50.9 NC_003521.1 + 87393 0.69 0.983462
Target:  5'- gCGGCGGAGgugacgccGAcgcucacgcccaggGGAUCGUCGCCUUUCc -3'
miRNA:   3'- gGUCGUCUU--------CU--------------UCUGGUAGCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 100779 0.66 0.999262
Target:  5'- gUAGCGcGAGGAGGACgAacagaagagggUCGCCUgggCUg -3'
miRNA:   3'- gGUCGU-CUUCUUCUGgU-----------AGCGGAa--GG- -5'
13958 3' -50.9 NC_003521.1 + 128048 0.66 0.999262
Target:  5'- gCGGUAGAAGu-GGCCGacgCGCCgcgcgaugCCg -3'
miRNA:   3'- gGUCGUCUUCuuCUGGUa--GCGGaa------GG- -5'
13958 3' -50.9 NC_003521.1 + 196046 0.66 0.999262
Target:  5'- gUCGGCcuAGGGccAGcACCGgcCGCCUUCCg -3'
miRNA:   3'- -GGUCGucUUCU--UC-UGGUa-GCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 231783 0.7 0.982888
Target:  5'- cCCuGCAGAAGAcgcucauucucacggAGuCCGUgGCUUUCUg -3'
miRNA:   3'- -GGuCGUCUUCU---------------UCuGGUAgCGGAAGG- -5'
13958 3' -50.9 NC_003521.1 + 193518 0.7 0.9819
Target:  5'- aCAGCGGcuGAGAcgacggaucggacGGACCuUCGCCgggaUCCu -3'
miRNA:   3'- gGUCGUC--UUCU-------------UCUGGuAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 101865 0.7 0.980014
Target:  5'- gCGGCGGuacauGAAGuaGCCGUCGuCCUggUCCa -3'
miRNA:   3'- gGUCGUCuu---CUUC--UGGUAGC-GGA--AGG- -5'
13958 3' -50.9 NC_003521.1 + 192904 0.7 0.977751
Target:  5'- aUCAGCAGcgcGAAGGCCGUCaggGCCaUCa -3'
miRNA:   3'- -GGUCGUCuu-CUUCUGGUAG---CGGaAGg -5'
13958 3' -50.9 NC_003521.1 + 110724 0.68 0.995069
Target:  5'- aCGGCAGGucccggguGGAGACCAgcgCGUacacgUCCa -3'
miRNA:   3'- gGUCGUCUu-------CUUCUGGUa--GCGga---AGG- -5'
13958 3' -50.9 NC_003521.1 + 180111 0.7 0.982101
Target:  5'- aCAGCGucuGGGAG-CCGUCGUCgucgUCCa -3'
miRNA:   3'- gGUCGUcu-UCUUCuGGUAGCGGa---AGG- -5'
13958 3' -50.9 NC_003521.1 + 225554 0.68 0.993428
Target:  5'- aCCAggcaguGCAGAcGggGACCcgUGUCgUCCu -3'
miRNA:   3'- -GGU------CGUCUuCuuCUGGuaGCGGaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.