miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13958 5' -51 NC_003521.1 + 27448 1.09 0.013659
Target:  5'- cGAAGACGGCUACGUGUUCUGCUACGUg -3'
miRNA:   3'- -CUUCUGCCGAUGCACAAGACGAUGCA- -5'
13958 5' -51 NC_003521.1 + 53424 0.81 0.494364
Target:  5'- cGAGGGCGGCcGCGUGUaCUGUUACGc -3'
miRNA:   3'- -CUUCUGCCGaUGCACAaGACGAUGCa -5'
13958 5' -51 NC_003521.1 + 58033 0.72 0.937775
Target:  5'- cGAGGGCGcGC-GCGUGUUgCUGCUgGCGg -3'
miRNA:   3'- -CUUCUGC-CGaUGCACAA-GACGA-UGCa -5'
13958 5' -51 NC_003521.1 + 195974 0.71 0.951252
Target:  5'- uGGAGGCGuuuuacgacacGCUGCGgGcgCUGCUACGUa -3'
miRNA:   3'- -CUUCUGC-----------CGAUGCaCaaGACGAUGCA- -5'
13958 5' -51 NC_003521.1 + 73911 0.71 0.955272
Target:  5'- uGGAGGCGGCcgcgGCGgagGccUUCUGCUugGg -3'
miRNA:   3'- -CUUCUGCCGa---UGCa--C--AAGACGAugCa -5'
13958 5' -51 NC_003521.1 + 133335 0.69 0.979552
Target:  5'- --uGGCGGCUGCGauggcUGUgacugCUGCUGCu- -3'
miRNA:   3'- cuuCUGCCGAUGC-----ACAa----GACGAUGca -5'
13958 5' -51 NC_003521.1 + 174031 0.69 0.985474
Target:  5'- aGGAGACGGCgguggcccgcACGUGg---GCUGCGa -3'
miRNA:   3'- -CUUCUGCCGa---------UGCACaagaCGAUGCa -5'
13958 5' -51 NC_003521.1 + 42277 0.69 0.985646
Target:  5'- --cGGCGGCgucugucgugccgcCGUGUUgCUGCUGCGa -3'
miRNA:   3'- cuuCUGCCGau------------GCACAA-GACGAUGCa -5'
13958 5' -51 NC_003521.1 + 138740 0.69 0.986644
Target:  5'- -cGGAgGGUUACGUGcUcuauuucuacauccUCUGCUACGa -3'
miRNA:   3'- cuUCUgCCGAUGCAC-A--------------AGACGAUGCa -5'
13958 5' -51 NC_003521.1 + 83884 0.68 0.988624
Target:  5'- gGAGGugGGCUACGgcaaaGUcaUCcGCUGCa- -3'
miRNA:   3'- -CUUCugCCGAUGCa----CA--AGaCGAUGca -5'
13958 5' -51 NC_003521.1 + 229317 0.68 0.988624
Target:  5'- uGggGACGGCU-Ca---UCUGCUGCGa -3'
miRNA:   3'- -CuuCUGCCGAuGcacaAGACGAUGCa -5'
13958 5' -51 NC_003521.1 + 213841 0.68 0.991217
Target:  5'- --cGGCuGCUACGUGgcgCUGCUGuCGg -3'
miRNA:   3'- cuuCUGcCGAUGCACaa-GACGAU-GCa -5'
13958 5' -51 NC_003521.1 + 150660 0.68 0.991217
Target:  5'- cGAAGGCGGCUcuccggcgGCGgcgccgCUGCUGCu- -3'
miRNA:   3'- -CUUCUGCCGA--------UGCacaa--GACGAUGca -5'
13958 5' -51 NC_003521.1 + 191684 0.68 0.993319
Target:  5'- cGAGGACGGCgaggcgucUGCGUGUUaaacgGCUguacGCGg -3'
miRNA:   3'- -CUUCUGCCG--------AUGCACAAga---CGA----UGCa -5'
13958 5' -51 NC_003521.1 + 132635 0.67 0.994207
Target:  5'- cGgcGGCGGCgccaccgGCG-GUUCUGCUuccuCGUc -3'
miRNA:   3'- -CuuCUGCCGa------UGCaCAAGACGAu---GCA- -5'
13958 5' -51 NC_003521.1 + 120906 0.67 0.994207
Target:  5'- cGggGGCGGCUGCuugcGUUUgcgGCUGCc- -3'
miRNA:   3'- -CuuCUGCCGAUGca--CAAGa--CGAUGca -5'
13958 5' -51 NC_003521.1 + 93314 0.67 0.995497
Target:  5'- aGGGACGGgaGCGggGUUCUuuuuugagggugcgGCUACGg -3'
miRNA:   3'- cUUCUGCCgaUGCa-CAAGA--------------CGAUGCa -5'
13958 5' -51 NC_003521.1 + 239557 0.67 0.995632
Target:  5'- -cGGGCGGCUagggucaGCGUGUUgcGCUGCa- -3'
miRNA:   3'- cuUCUGCCGA-------UGCACAAgaCGAUGca -5'
13958 5' -51 NC_003521.1 + 201758 0.67 0.995632
Target:  5'- -cGGGCGGCUagggucaGCGUGUUgcGCUGCa- -3'
miRNA:   3'- cuUCUGCCGA-------UGCACAAgaCGAUGca -5'
13958 5' -51 NC_003521.1 + 129944 0.67 0.995698
Target:  5'- cGAGACGGCgca--GUUCUGCcGCGg -3'
miRNA:   3'- cUUCUGCCGaugcaCAAGACGaUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.