Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13959 | 3' | -64.2 | NC_003521.1 | + | 212812 | 0.68 | 0.558421 |
Target: 5'- uCCCCCUGGCcgucgUGG-GCCU-GUGUUUCg -3' miRNA: 3'- cGGGGGGCCG-----ACCuCGGAcCACGAGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 121895 | 0.68 | 0.521889 |
Target: 5'- gGgCUCCUGGCUGGGGCagaUGGcccgGC-CCg -3' miRNA: 3'- -CgGGGGGCCGACCUCGg--ACCa---CGaGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 166246 | 0.68 | 0.567673 |
Target: 5'- uGCCgCCCGGCgagcGGGCC--GUGCUCa -3' miRNA: 3'- -CGGgGGGCCGac--CUCGGacCACGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 75338 | 0.68 | 0.548294 |
Target: 5'- gGCCaCCauGGCgucGGAGgcggugggcaggaUCUGGUGCUCCu -3' miRNA: 3'- -CGG-GGggCCGa--CCUC-------------GGACCACGAGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 40316 | 0.68 | 0.567673 |
Target: 5'- aGCCCCuuGGCc--AGCUcGGUGCgcgCCg -3' miRNA: 3'- -CGGGGggCCGaccUCGGaCCACGa--GG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 168123 | 0.67 | 0.614404 |
Target: 5'- uGCCgaCCUcaugaagaagCGGCcgcggGGGGCCUGGccGCUCCu -3' miRNA: 3'- -CGG--GGG----------GCCGa----CCUCGGACCa-CGAGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 6421 | 0.67 | 0.602198 |
Target: 5'- gGCCCCgCCaGGgguugcugcucuucCUGGGGCuuCUGGUGCuguUCCu -3' miRNA: 3'- -CGGGG-GG-CC--------------GACCUCG--GACCACG---AGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 27760 | 0.67 | 0.579757 |
Target: 5'- cGCCCCCCGuggaguucuccgaccGCcacaugacggaccUGGccAGCCUGGcGCUCa -3' miRNA: 3'- -CGGGGGGC---------------CG-------------ACC--UCGGACCaCGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 123608 | 0.67 | 0.586287 |
Target: 5'- gGCCacggCCgCGGCgcUGGGGCCgucGGUGUUCg -3' miRNA: 3'- -CGGg---GG-GCCG--ACCUCGGa--CCACGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 218725 | 0.67 | 0.602198 |
Target: 5'- uGCgCCCaCGGCgUGGuGCCggccauguccuccgUGGUGCcgCCg -3' miRNA: 3'- -CGgGGG-GCCG-ACCuCGG--------------ACCACGa-GG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 150667 | 0.67 | 0.576963 |
Target: 5'- gGCUCUCCGGCggcGGcGCCgcugcugcugGGUGCUgCu -3' miRNA: 3'- -CGGGGGGCCGa--CCuCGGa---------CCACGAgG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 219470 | 0.67 | 0.605012 |
Target: 5'- uGCUgCCUGGCgaccgccaucaUGG-GCCUGGgGCUCa -3' miRNA: 3'- -CGGgGGGCCG-----------ACCuCGGACCaCGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 140831 | 0.67 | 0.614404 |
Target: 5'- aUCCUCgGGC-GGcGCCUGGguggagaGCUCCa -3' miRNA: 3'- cGGGGGgCCGaCCuCGGACCa------CGAGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 101571 | 0.66 | 0.633214 |
Target: 5'- cGUCCCCCcGCUccgcgcgaGGAGCCccguacaggUGGUaGCUCa -3' miRNA: 3'- -CGGGGGGcCGA--------CCUCGG---------ACCA-CGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 150458 | 0.66 | 0.642621 |
Target: 5'- uCCUCCUGGuCUGGGgcggcgagcGCCUGGUGgggCCc -3' miRNA: 3'- cGGGGGGCC-GACCU---------CGGACCACga-GG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 708 | 0.66 | 0.680116 |
Target: 5'- uGCCUCaCCGGCUGGcuuaccgccGGCUUGGc-CUCg -3' miRNA: 3'- -CGGGG-GGCCGACC---------UCGGACCacGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 124189 | 0.66 | 0.680116 |
Target: 5'- cGCCUgCCGGCUGGGGgUgagcGG-GC-CCu -3' miRNA: 3'- -CGGGgGGCCGACCUCgGa---CCaCGaGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 224695 | 0.66 | 0.680116 |
Target: 5'- gGCgCCCgGGCgugUGGAaguucacgucccGCCcgUGGUGCUCg -3' miRNA: 3'- -CGgGGGgCCG---ACCU------------CGG--ACCACGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 200058 | 0.66 | 0.680116 |
Target: 5'- uGCCUCaCCGGCUGGcuuaccgccGGCUUGGc-CUCg -3' miRNA: 3'- -CGGGG-GGCCGACC---------UCGGACCacGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 149611 | 0.66 | 0.689422 |
Target: 5'- cGCCCUCaugcgcgaaaCGGCgcUGGAcGCCgccggcgaGGUGCUCUc -3' miRNA: 3'- -CGGGGG----------GCCG--ACCU-CGGa-------CCACGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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