miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13959 3' -64.2 NC_003521.1 + 149611 0.66 0.689422
Target:  5'- cGCCCUCaugcgcgaaaCGGCgcUGGAcGCCgccggcgaGGUGCUCUc -3'
miRNA:   3'- -CGGGGG----------GCCG--ACCU-CGGa-------CCACGAGG- -5'
13959 3' -64.2 NC_003521.1 + 148102 0.66 0.642621
Target:  5'- uGCaCCCCCGGCUGcacGGCaccGUGCaguUCCg -3'
miRNA:   3'- -CG-GGGGGCCGACc--UCGgacCACG---AGG- -5'
13959 3' -64.2 NC_003521.1 + 144121 0.7 0.410919
Target:  5'- aCCgCCgCGGcCUGGAcgaggugcGCCUGG-GCUCCg -3'
miRNA:   3'- cGGgGG-GCC-GACCU--------CGGACCaCGAGG- -5'
13959 3' -64.2 NC_003521.1 + 140831 0.67 0.614404
Target:  5'- aUCCUCgGGC-GGcGCCUGGguggagaGCUCCa -3'
miRNA:   3'- cGGGGGgCCGaCCuCGGACCa------CGAGG- -5'
13959 3' -64.2 NC_003521.1 + 140340 0.69 0.512897
Target:  5'- uGCaCCCCGaGCUGG-GCCUGGcGCa-- -3'
miRNA:   3'- -CGgGGGGC-CGACCuCGGACCaCGagg -5'
13959 3' -64.2 NC_003521.1 + 138092 0.69 0.468972
Target:  5'- gGCCCuCCCaGGCcGaGGUCUGcGUGCUCUa -3'
miRNA:   3'- -CGGG-GGG-CCGaCcUCGGAC-CACGAGG- -5'
13959 3' -64.2 NC_003521.1 + 134470 0.66 0.633214
Target:  5'- aGCa-CCCGGau-GAGUUUGGUGCUCUg -3'
miRNA:   3'- -CGggGGGCCgacCUCGGACCACGAGG- -5'
13959 3' -64.2 NC_003521.1 + 133604 0.66 0.689422
Target:  5'- aGCCUCCU-GCUGGAGCaCUGuGUGggCa -3'
miRNA:   3'- -CGGGGGGcCGACCUCG-GAC-CACgaGg -5'
13959 3' -64.2 NC_003521.1 + 124189 0.66 0.680116
Target:  5'- cGCCUgCCGGCUGGGGgUgagcGG-GC-CCu -3'
miRNA:   3'- -CGGGgGGCCGACCUCgGa---CCaCGaGG- -5'
13959 3' -64.2 NC_003521.1 + 123608 0.67 0.586287
Target:  5'- gGCCacggCCgCGGCgcUGGGGCCgucGGUGUUCg -3'
miRNA:   3'- -CGGg---GG-GCCG--ACCUCGGa--CCACGAGg -5'
13959 3' -64.2 NC_003521.1 + 121895 0.68 0.521889
Target:  5'- gGgCUCCUGGCUGGGGCagaUGGcccgGC-CCg -3'
miRNA:   3'- -CgGGGGGCCGACCUCGg--ACCa---CGaGG- -5'
13959 3' -64.2 NC_003521.1 + 119898 0.69 0.49511
Target:  5'- cGCCCCgCGGgUGG-GCCUGGaacagGUggaugCCg -3'
miRNA:   3'- -CGGGGgGCCgACCuCGGACCa----CGa----GG- -5'
13959 3' -64.2 NC_003521.1 + 111810 0.78 0.141603
Target:  5'- uGCCCUCUGGCggcgccagcgagaucUGGAGCgUGGUGC-CCa -3'
miRNA:   3'- -CGGGGGGCCG---------------ACCUCGgACCACGaGG- -5'
13959 3' -64.2 NC_003521.1 + 101571 0.66 0.633214
Target:  5'- cGUCCCCCcGCUccgcgcgaGGAGCCccguacaggUGGUaGCUCa -3'
miRNA:   3'- -CGGGGGGcCGA--------CCUCGG---------ACCA-CGAGg -5'
13959 3' -64.2 NC_003521.1 + 100125 0.71 0.392839
Target:  5'- aCCCCgCGGCUGGcgguccugcgggaaGGCCgUGGgGCUCUu -3'
miRNA:   3'- cGGGGgGCCGACC--------------UCGG-ACCaCGAGG- -5'
13959 3' -64.2 NC_003521.1 + 92664 0.66 0.670775
Target:  5'- uCCCCCCGGUcGaGcAGCCUcggcgaGGUGCcgggUCCc -3'
miRNA:   3'- cGGGGGGCCGaC-C-UCGGA------CCACG----AGG- -5'
13959 3' -64.2 NC_003521.1 + 80415 0.66 0.667031
Target:  5'- gGCCCUCagCGGCUGGAcgcgcagcaccgGCCgcaaaaacacaagGGcGCUCCc -3'
miRNA:   3'- -CGGGGG--GCCGACCU------------CGGa------------CCaCGAGG- -5'
13959 3' -64.2 NC_003521.1 + 79130 0.66 0.661408
Target:  5'- cGCCUggucaucgaCCGGC-GGAucaccaccuucGgCUGGUGCUCCg -3'
miRNA:   3'- -CGGGg--------GGCCGaCCU-----------CgGACCACGAGG- -5'
13959 3' -64.2 NC_003521.1 + 75338 0.68 0.548294
Target:  5'- gGCCaCCauGGCgucGGAGgcggugggcaggaUCUGGUGCUCCu -3'
miRNA:   3'- -CGG-GGggCCGa--CCUC-------------GGACCACGAGG- -5'
13959 3' -64.2 NC_003521.1 + 70372 0.68 0.530942
Target:  5'- gGCCCUUCGGC-GGcacgccGGCCaGGUGC-CCu -3'
miRNA:   3'- -CGGGGGGCCGaCC------UCGGaCCACGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.