Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13959 | 3' | -64.2 | NC_003521.1 | + | 27631 | 1.12 | 0.000544 |
Target: 5'- gGCCCCCCGGCUGGAGCCUGGUGCUCCa -3' miRNA: 3'- -CGGGGGGCCGACCUCGGACCACGAGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 6421 | 0.67 | 0.602198 |
Target: 5'- gGCCCCgCCaGGgguugcugcucuucCUGGGGCuuCUGGUGCuguUCCu -3' miRNA: 3'- -CGGGG-GG-CC--------------GACCUCG--GACCACG---AGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 168123 | 0.67 | 0.614404 |
Target: 5'- uGCCgaCCUcaugaagaagCGGCcgcggGGGGCCUGGccGCUCCu -3' miRNA: 3'- -CGG--GGG----------GCCGa----CCUCGGACCa-CGAGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 708 | 0.66 | 0.680116 |
Target: 5'- uGCCUCaCCGGCUGGcuuaccgccGGCUUGGc-CUCg -3' miRNA: 3'- -CGGGG-GGCCGACC---------UCGGACCacGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 223409 | 0.71 | 0.379054 |
Target: 5'- gGCCCugcguaaCCCGGCcaacUGGcuCCUGGUGCUgCg -3' miRNA: 3'- -CGGG-------GGGCCG----ACCucGGACCACGAgG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 49894 | 0.7 | 0.435261 |
Target: 5'- uGCCCCCC-GCUGGA-CCaGGaGCUCg -3' miRNA: 3'- -CGGGGGGcCGACCUcGGaCCaCGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 166137 | 0.69 | 0.477607 |
Target: 5'- cGCCgCCCGagcacgugcaccGCUGGAGCUUccuGUGCUCg -3' miRNA: 3'- -CGGgGGGC------------CGACCUCGGAc--CACGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 153334 | 0.69 | 0.486321 |
Target: 5'- gGCCcgggCCCCGGCggcggaGGAgGCCUGGggGCcgCCu -3' miRNA: 3'- -CGG----GGGGCCGa-----CCU-CGGACCa-CGa-GG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 70372 | 0.68 | 0.530942 |
Target: 5'- gGCCCUUCGGC-GGcacgccGGCCaGGUGC-CCu -3' miRNA: 3'- -CGGGGGGCCGaCC------UCGGaCCACGaGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 218725 | 0.67 | 0.602198 |
Target: 5'- uGCgCCCaCGGCgUGGuGCCggccauguccuccgUGGUGCcgCCg -3' miRNA: 3'- -CGgGGG-GCCG-ACCuCGG--------------ACCACGa-GG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 212812 | 0.68 | 0.558421 |
Target: 5'- uCCCCCUGGCcgucgUGG-GCCU-GUGUUUCg -3' miRNA: 3'- cGGGGGGCCG-----ACCuCGGAcCACGAGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 140340 | 0.69 | 0.512897 |
Target: 5'- uGCaCCCCGaGCUGG-GCCUGGcGCa-- -3' miRNA: 3'- -CGgGGGGC-CGACCuCGGACCaCGagg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 229163 | 0.76 | 0.198928 |
Target: 5'- aGUCCCCCaGCcGG-GCCcggcUGGUGCUCCu -3' miRNA: 3'- -CGGGGGGcCGaCCuCGG----ACCACGAGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 27760 | 0.67 | 0.579757 |
Target: 5'- cGCCCCCCGuggaguucuccgaccGCcacaugacggaccUGGccAGCCUGGcGCUCa -3' miRNA: 3'- -CGGGGGGC---------------CG-------------ACC--UCGGACCaCGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 50572 | 0.74 | 0.238269 |
Target: 5'- uGCCuCCCUGGCUgaGGAGCgaGGUGCg-- -3' miRNA: 3'- -CGG-GGGGCCGA--CCUCGgaCCACGagg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 26029 | 0.69 | 0.503969 |
Target: 5'- aGCCCCUgGGCU---GCCUGGUGgUgCCc -3' miRNA: 3'- -CGGGGGgCCGAccuCGGACCACgA-GG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 123608 | 0.67 | 0.586287 |
Target: 5'- gGCCacggCCgCGGCgcUGGGGCCgucGGUGUUCg -3' miRNA: 3'- -CGGg---GG-GCCG--ACCUCGGa--CCACGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 219470 | 0.67 | 0.605012 |
Target: 5'- uGCUgCCUGGCgaccgccaucaUGG-GCCUGGgGCUCa -3' miRNA: 3'- -CGGgGGGCCG-----------ACCuCGGACCaCGAGg -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 34843 | 0.72 | 0.329294 |
Target: 5'- cGCCUgcagCCCGGCgucAGCCUGGUGCaCCc -3' miRNA: 3'- -CGGG----GGGCCGaccUCGGACCACGaGG- -5' |
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13959 | 3' | -64.2 | NC_003521.1 | + | 56234 | 0.69 | 0.460416 |
Target: 5'- gGCCCCUgcacauCGGCguggUGGGGCUgcacacGGUGCUCa -3' miRNA: 3'- -CGGGGG------GCCG----ACCUCGGa-----CCACGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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