miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13959 3' -64.2 NC_003521.1 + 134470 0.66 0.633214
Target:  5'- aGCa-CCCGGau-GAGUUUGGUGCUCUg -3'
miRNA:   3'- -CGggGGGCCgacCUCGGACCACGAGG- -5'
13959 3' -64.2 NC_003521.1 + 140831 0.67 0.614404
Target:  5'- aUCCUCgGGC-GGcGCCUGGguggagaGCUCCa -3'
miRNA:   3'- cGGGGGgCCGaCCuCGGACCa------CGAGG- -5'
13959 3' -64.2 NC_003521.1 + 168123 0.67 0.614404
Target:  5'- uGCCgaCCUcaugaagaagCGGCcgcggGGGGCCUGGccGCUCCu -3'
miRNA:   3'- -CGG--GGG----------GCCGa----CCUCGGACCa-CGAGG- -5'
13959 3' -64.2 NC_003521.1 + 219470 0.67 0.605012
Target:  5'- uGCUgCCUGGCgaccgccaucaUGG-GCCUGGgGCUCa -3'
miRNA:   3'- -CGGgGGGCCG-----------ACCuCGGACCaCGAGg -5'
13959 3' -64.2 NC_003521.1 + 218725 0.67 0.602198
Target:  5'- uGCgCCCaCGGCgUGGuGCCggccauguccuccgUGGUGCcgCCg -3'
miRNA:   3'- -CGgGGG-GCCG-ACCuCGG--------------ACCACGa-GG- -5'
13959 3' -64.2 NC_003521.1 + 6421 0.67 0.602198
Target:  5'- gGCCCCgCCaGGgguugcugcucuucCUGGGGCuuCUGGUGCuguUCCu -3'
miRNA:   3'- -CGGGG-GG-CC--------------GACCUCG--GACCACG---AGG- -5'
13959 3' -64.2 NC_003521.1 + 123608 0.67 0.586287
Target:  5'- gGCCacggCCgCGGCgcUGGGGCCgucGGUGUUCg -3'
miRNA:   3'- -CGGg---GG-GCCG--ACCUCGGa--CCACGAGg -5'
13959 3' -64.2 NC_003521.1 + 27760 0.67 0.579757
Target:  5'- cGCCCCCCGuggaguucuccgaccGCcacaugacggaccUGGccAGCCUGGcGCUCa -3'
miRNA:   3'- -CGGGGGGC---------------CG-------------ACC--UCGGACCaCGAGg -5'
13959 3' -64.2 NC_003521.1 + 150667 0.67 0.576963
Target:  5'- gGCUCUCCGGCggcGGcGCCgcugcugcugGGUGCUgCu -3'
miRNA:   3'- -CGGGGGGCCGa--CCuCGGa---------CCACGAgG- -5'
13959 3' -64.2 NC_003521.1 + 40316 0.68 0.567673
Target:  5'- aGCCCCuuGGCc--AGCUcGGUGCgcgCCg -3'
miRNA:   3'- -CGGGGggCCGaccUCGGaCCACGa--GG- -5'
13959 3' -64.2 NC_003521.1 + 166246 0.68 0.567673
Target:  5'- uGCCgCCCGGCgagcGGGCC--GUGCUCa -3'
miRNA:   3'- -CGGgGGGCCGac--CUCGGacCACGAGg -5'
13959 3' -64.2 NC_003521.1 + 212812 0.68 0.558421
Target:  5'- uCCCCCUGGCcgucgUGG-GCCU-GUGUUUCg -3'
miRNA:   3'- cGGGGGGCCG-----ACCuCGGAcCACGAGG- -5'
13959 3' -64.2 NC_003521.1 + 75338 0.68 0.548294
Target:  5'- gGCCaCCauGGCgucGGAGgcggugggcaggaUCUGGUGCUCCu -3'
miRNA:   3'- -CGG-GGggCCGa--CCUC-------------GGACCACGAGG- -5'
13959 3' -64.2 NC_003521.1 + 70372 0.68 0.530942
Target:  5'- gGCCCUUCGGC-GGcacgccGGCCaGGUGC-CCu -3'
miRNA:   3'- -CGGGGGGCCGaCC------UCGGaCCACGaGG- -5'
13959 3' -64.2 NC_003521.1 + 121895 0.68 0.521889
Target:  5'- gGgCUCCUGGCUGGGGCagaUGGcccgGC-CCg -3'
miRNA:   3'- -CgGGGGGCCGACCUCGg--ACCa---CGaGG- -5'
13959 3' -64.2 NC_003521.1 + 140340 0.69 0.512897
Target:  5'- uGCaCCCCGaGCUGG-GCCUGGcGCa-- -3'
miRNA:   3'- -CGgGGGGC-CGACCuCGGACCaCGagg -5'
13959 3' -64.2 NC_003521.1 + 43863 0.69 0.504859
Target:  5'- cGCCCCggCCGGCUcccGGGCCgucgcccacgcuaccGGUGCUgCCg -3'
miRNA:   3'- -CGGGG--GGCCGAc--CUCGGa--------------CCACGA-GG- -5'
13959 3' -64.2 NC_003521.1 + 26029 0.69 0.503969
Target:  5'- aGCCCCUgGGCU---GCCUGGUGgUgCCc -3'
miRNA:   3'- -CGGGGGgCCGAccuCGGACCACgA-GG- -5'
13959 3' -64.2 NC_003521.1 + 119898 0.69 0.49511
Target:  5'- cGCCCCgCGGgUGG-GCCUGGaacagGUggaugCCg -3'
miRNA:   3'- -CGGGGgGCCgACCuCGGACCa----CGa----GG- -5'
13959 3' -64.2 NC_003521.1 + 153334 0.69 0.486321
Target:  5'- gGCCcgggCCCCGGCggcggaGGAgGCCUGGggGCcgCCu -3'
miRNA:   3'- -CGG----GGGGCCGa-----CCU-CGGACCa-CGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.