miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1396 5' -60.6 NC_001335.1 + 9047 0.66 0.436735
Target:  5'- gGACCCGGcUCUcGGaCCugU-ACGGCAc -3'
miRNA:   3'- -CUGGGCCuAGGaCC-GGugGaUGCCGU- -5'
1396 5' -60.6 NC_001335.1 + 45313 0.66 0.418127
Target:  5'- aGGCUaCGGGUUCgucgGGCCGCUguCGGCGa -3'
miRNA:   3'- -CUGG-GCCUAGGa---CCGGUGGauGCCGU- -5'
1396 5' -60.6 NC_001335.1 + 50757 0.66 0.409005
Target:  5'- cGGCCgGGGgc--GGCgCACCUugGGCGc -3'
miRNA:   3'- -CUGGgCCUaggaCCG-GUGGAugCCGU- -5'
1396 5' -60.6 NC_001335.1 + 1151 0.66 0.409005
Target:  5'- -cCCCGGAUCg-GGCgGCgUagGCGGCGu -3'
miRNA:   3'- cuGGGCCUAGgaCCGgUGgA--UGCCGU- -5'
1396 5' -60.6 NC_001335.1 + 22954 0.66 0.39114
Target:  5'- aGGCCCaGAUC--GGCUACCgccgcaACGGCAa -3'
miRNA:   3'- -CUGGGcCUAGgaCCGGUGGa-----UGCCGU- -5'
1396 5' -60.6 NC_001335.1 + 27073 0.67 0.340692
Target:  5'- cACCgGGAacaaCUGGCCACCg--GGCAu -3'
miRNA:   3'- cUGGgCCUag--GACCGGUGGaugCCGU- -5'
1396 5' -60.6 NC_001335.1 + 49646 0.68 0.317292
Target:  5'- aGACCUGGA---UGGCCGCgCUggACGGCu -3'
miRNA:   3'- -CUGGGCCUaggACCGGUG-GA--UGCCGu -5'
1396 5' -60.6 NC_001335.1 + 34141 0.68 0.295123
Target:  5'- -uUCUGGcgUCUGGCCAaggagggCUACGGCAg -3'
miRNA:   3'- cuGGGCCuaGGACCGGUg------GAUGCCGU- -5'
1396 5' -60.6 NC_001335.1 + 26219 0.69 0.254442
Target:  5'- aGGCgCGGGUUCUGGCCGCgagacagguaCUuCGGCGu -3'
miRNA:   3'- -CUGgGCCUAGGACCGGUG----------GAuGCCGU- -5'
1396 5' -60.6 NC_001335.1 + 9248 0.76 0.08271
Target:  5'- uGGCCCGGAUCCUGGCguucgaggaCGCUgAgGGCAa -3'
miRNA:   3'- -CUGGGCCUAGGACCG---------GUGGaUgCCGU- -5'
1396 5' -60.6 NC_001335.1 + 39993 0.77 0.076055
Target:  5'- uGAUCCaGuUCCUGGCCACCcgcUACGGCGu -3'
miRNA:   3'- -CUGGGcCuAGGACCGGUGG---AUGCCGU- -5'
1396 5' -60.6 NC_001335.1 + 39120 1.08 0.00034
Target:  5'- aGACCCGGAUCCUGGCCACCUACGGCAu -3'
miRNA:   3'- -CUGGGCCUAGGACCGGUGGAUGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.