Results 1 - 20 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 55351 | 0.66 | 0.914583 |
Target: 5'- aGGUGaucgccgaGCGGGUgcGcCGGAGCGCcuAGGGg -3' miRNA: 3'- -CCAC--------UGCCCGaaCaGCCUCGCG--UCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 103557 | 0.66 | 0.930567 |
Target: 5'- gGGaUGACgGGGCccagGUCGcccGCGCAGAAg -3' miRNA: 3'- -CC-ACUG-CCCGaa--CAGCcu-CGCGUCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 213530 | 0.66 | 0.925463 |
Target: 5'- aGGaUGGCGGGCagcUCGGAGCacCAGGu -3' miRNA: 3'- -CC-ACUGCCCGaacAGCCUCGc-GUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 238468 | 0.66 | 0.920135 |
Target: 5'- --cGGCGGGCggGgCGGAGaCGCGGc- -3' miRNA: 3'- ccaCUGCCCGaaCaGCCUC-GCGUCuu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 170529 | 0.66 | 0.914583 |
Target: 5'- uGUGACGGGga---CGGGGgGCAGGAg -3' miRNA: 3'- cCACUGCCCgaacaGCCUCgCGUCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 69420 | 0.66 | 0.909396 |
Target: 5'- cGGUGACGGcGCgcaccaccacggUGGAGuCGCAGGu -3' miRNA: 3'- -CCACUGCC-CGaaca--------GCCUC-GCGUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 68745 | 0.66 | 0.930567 |
Target: 5'- gGGUGAgGGGCgg--CGGGuucuGaCGCAGAAa -3' miRNA: 3'- -CCACUgCCCGaacaGCCU----C-GCGUCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 146701 | 0.66 | 0.930567 |
Target: 5'- aGGUGugGGGCaUGuuaUCGuagccGCGCAGGu -3' miRNA: 3'- -CCACugCCCGaAC---AGCcu---CGCGUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 202848 | 0.66 | 0.920135 |
Target: 5'- --cGGCGGGCggGgCGGAGaCGCGGc- -3' miRNA: 3'- ccaCUGCCCGaaCaGCCUC-GCGUCuu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 139318 | 0.66 | 0.914583 |
Target: 5'- gGGUGaucuGCGGcGCcgUuUUGGAGCGCAGGu -3' miRNA: 3'- -CCAC----UGCC-CGa-AcAGCCUCGCGUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 175672 | 0.67 | 0.902813 |
Target: 5'- aGGUGAguccCGGGCUUGUucaugcaugucaCGGGG-GUGGAAa -3' miRNA: 3'- -CCACU----GCCCGAACA------------GCCUCgCGUCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 179826 | 0.67 | 0.890167 |
Target: 5'- cGGUGugGGGCcagUGUCgcagGGAGgaagccgaGCGGGAc -3' miRNA: 3'- -CCACugCCCGa--ACAG----CCUCg-------CGUCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 66862 | 0.67 | 0.883522 |
Target: 5'- cGGgucgGGCagGGGCgcGUCGGAGCuCAGAc -3' miRNA: 3'- -CCa---CUG--CCCGaaCAGCCUCGcGUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 214434 | 0.67 | 0.883522 |
Target: 5'- gGGUGACGGuGCUgcagaaguugaUGaCGGcGGCGCuGAAg -3' miRNA: 3'- -CCACUGCC-CGA-----------ACaGCC-UCGCGuCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 84178 | 0.67 | 0.883522 |
Target: 5'- gGGcGACGGGC----CGGAGCGgGGGAc -3' miRNA: 3'- -CCaCUGCCCGaacaGCCUCGCgUCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 194713 | 0.67 | 0.883522 |
Target: 5'- --cGACGcGGCUgugaGGGGCGCGGGGu -3' miRNA: 3'- ccaCUGC-CCGAacagCCUCGCGUCUU- -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 190282 | 0.67 | 0.902813 |
Target: 5'- cGGUGAUGGcaGCggUGUCcccgguggugGGAGCGguGAc -3' miRNA: 3'- -CCACUGCC--CGa-ACAG----------CCUCGCguCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 156376 | 0.67 | 0.883522 |
Target: 5'- -cUGACGGGCgaGaaGGAGaCGCGGGc -3' miRNA: 3'- ccACUGCCCGaaCagCCUC-GCGUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 227689 | 0.67 | 0.896598 |
Target: 5'- --gGGCGGGCgucgUUGUgGGGGUGuCAGAu -3' miRNA: 3'- ccaCUGCCCG----AACAgCCUCGC-GUCUu -5' |
|||||||
13960 | 5' | -57.2 | NC_003521.1 | + | 117515 | 0.67 | 0.876669 |
Target: 5'- cGGUGGCGGGa-UGgCGGcGGCGcCGGGAg -3' miRNA: 3'- -CCACUGCCCgaACaGCC-UCGC-GUCUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home