miRNA display CGI


Results 41 - 60 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13963 5' -55.6 NC_003521.1 + 37397 0.74 0.636053
Target:  5'- cGAGGACGCCuucuacacgggCCUgACCGuguGGCGCGg -3'
miRNA:   3'- cCUCCUGUGGua---------GGAgUGGU---UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 129702 0.74 0.628127
Target:  5'- cGAGGACGCCcgCUUCugCcGGcCGCGg -3'
miRNA:   3'- cCUCCUGUGGuaGGAGugGuUC-GCGC- -5'
13963 5' -55.6 NC_003521.1 + 79226 0.74 0.628127
Target:  5'- cGAGGGCACCAgaugCC-CGCgGuAGCGCGg -3'
miRNA:   3'- cCUCCUGUGGUa---GGaGUGgU-UCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 233734 0.76 0.546633
Target:  5'- aGGAGGACGCCGccgccgcgucugcuUCuuCUCACCGGGgGCa -3'
miRNA:   3'- -CCUCCUGUGGU--------------AG--GAGUGGUUCgCGc -5'
13963 5' -55.6 NC_003521.1 + 146839 0.77 0.501923
Target:  5'- uGGGGGGCGCCucGUCCUCGCCuc-CGCc -3'
miRNA:   3'- -CCUCCUGUGG--UAGGAGUGGuucGCGc -5'
13963 5' -55.6 NC_003521.1 + 240033 0.71 0.790617
Target:  5'- cGGcGGGGCGCCgggcgGUCCUcCGCCGauGGCGCc -3'
miRNA:   3'- -CC-UCCUGUGG-----UAGGA-GUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 75980 0.71 0.799366
Target:  5'- cGAGGA-GCgGcCCUCGCCGGGCGCc -3'
miRNA:   3'- cCUCCUgUGgUaGGAGUGGUUCGCGc -5'
13963 5' -55.6 NC_003521.1 + 80892 0.69 0.87369
Target:  5'- cGGuGGuuGCCcaacaggaucucguuGUCCUCACCGAGCuGCc -3'
miRNA:   3'- -CCuCCugUGG---------------UAGGAGUGGUUCG-CGc -5'
13963 5' -55.6 NC_003521.1 + 100629 0.69 0.870859
Target:  5'- cGGGGGACcucgaaaaccgGCCGUCC-CGCCGcguuGCGuCGg -3'
miRNA:   3'- -CCUCCUG-----------UGGUAGGaGUGGUu---CGC-GC- -5'
13963 5' -55.6 NC_003521.1 + 113280 0.69 0.870859
Target:  5'- --cGGACAgCGUCUUCGCUccGCGCu -3'
miRNA:   3'- ccuCCUGUgGUAGGAGUGGuuCGCGc -5'
13963 5' -55.6 NC_003521.1 + 187089 0.7 0.86364
Target:  5'- aGGGGGACgACUA-CCUCcCCuccGCGCGa -3'
miRNA:   3'- -CCUCCUG-UGGUaGGAGuGGuu-CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 36164 0.7 0.86364
Target:  5'- aGGAGGACACCccggacggcGUgcccacgcaCCUgGCCGAGCGg- -3'
miRNA:   3'- -CCUCCUGUGG---------UA---------GGAgUGGUUCGCgc -5'
13963 5' -55.6 NC_003521.1 + 68339 0.7 0.856227
Target:  5'- cGAGGAUucCUAUCC-CGCCGacGGCGCa -3'
miRNA:   3'- cCUCCUGu-GGUAGGaGUGGU--UCGCGc -5'
13963 5' -55.6 NC_003521.1 + 128793 0.7 0.856227
Target:  5'- --cGGugGCgG-CCUcCACCAGGCGCGu -3'
miRNA:   3'- ccuCCugUGgUaGGA-GUGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 61047 0.7 0.848622
Target:  5'- aGGuGGACGCCuccGUCUUCAagaCGGuGCGCGa -3'
miRNA:   3'- -CCuCCUGUGG---UAGGAGUg--GUU-CGCGC- -5'
13963 5' -55.6 NC_003521.1 + 225277 0.7 0.840834
Target:  5'- aGGuGGGCGCCc-CCUCuuCCcAGCGCGu -3'
miRNA:   3'- -CCuCCUGUGGuaGGAGu-GGuUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 117991 0.71 0.824732
Target:  5'- cGAGcugcgcGACGCCAUCCacgaGCuCAAGCGCGa -3'
miRNA:   3'- cCUC------CUGUGGUAGGag--UG-GUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 92479 0.71 0.824732
Target:  5'- cGGGGGuCucCCAgCCUCuCCGGGCGUGg -3'
miRNA:   3'- -CCUCCuGu-GGUaGGAGuGGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 34570 0.71 0.824732
Target:  5'- cGGGGuGCACCAggcugacgCCgggCugCAGGCGCGc -3'
miRNA:   3'- -CCUCcUGUGGUa-------GGa--GugGUUCGCGC- -5'
13963 5' -55.6 NC_003521.1 + 88320 0.71 0.816431
Target:  5'- uGAGGAUGCgGgUCUCGCCgAAGCGCa -3'
miRNA:   3'- cCUCCUGUGgUaGGAGUGG-UUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.