miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 40345 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 119796 0.67 0.901947
Target:  5'- gCgACGAGGUCggcgccgccgaGGAGGUCuggagcaGCGGCu -3'
miRNA:   3'- gGgUGCUCCAG-----------CCUCCAGug-----CGCUGu -5'
13964 3' -57.9 NC_003521.1 + 46392 0.66 0.933974
Target:  5'- -gCGCGGGGUgCGuGGGG-CGCGCGGg- -3'
miRNA:   3'- ggGUGCUCCA-GC-CUCCaGUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 210095 1.1 0.003486
Target:  5'- cCCCACGAGGUCGGAGGUCACGCGACAu -3'
miRNA:   3'- -GGGUGCUCCAGCCUCCAGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 132430 0.66 0.942958
Target:  5'- -aCACGGGGUCGGGuuagCGUGCGGCGc -3'
miRNA:   3'- ggGUGCUCCAGCCUcca-GUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 174208 0.66 0.938571
Target:  5'- gCCCACGuugGGGUCGcGcGGGUCgggcagggGCGCGuCGg -3'
miRNA:   3'- -GGGUGC---UCCAGC-C-UCCAG--------UGCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 168061 0.71 0.700609
Target:  5'- gCCCGucuCGuGGUaGGAGGUagaGCGCGGCAc -3'
miRNA:   3'- -GGGU---GCuCCAgCCUCCAg--UGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 223489 0.66 0.924144
Target:  5'- gCCCGgGAGGUgGGGcGGaUCG-GCGACu -3'
miRNA:   3'- -GGGUgCUCCAgCCU-CC-AGUgCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 35386 0.73 0.595033
Target:  5'- cCCCucgGCGAGGaCGcGGGcCGCGCGACAg -3'
miRNA:   3'- -GGG---UGCUCCaGCcUCCaGUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 87387 0.71 0.710046
Target:  5'- --gACGAGGcggCGGAGGUgACGcCGACGc -3'
miRNA:   3'- gggUGCUCCa--GCCUCCAgUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 107373 0.69 0.840273
Target:  5'- gUCACGAGGUCcuGGA-GUUGCGUGGCu -3'
miRNA:   3'- gGGUGCUCCAG--CCUcCAGUGCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 86269 0.67 0.918911
Target:  5'- gCCgGCGAGGcgaagUUGGGGGUgGCGCccaACAc -3'
miRNA:   3'- -GGgUGCUCC-----AGCCUCCAgUGCGc--UGU- -5'
13964 3' -57.9 NC_003521.1 + 202017 0.67 0.913466
Target:  5'- gCCGCGAccaGGUcCGGGGGUC-CgGCGAa- -3'
miRNA:   3'- gGGUGCU---CCA-GCCUCCAGuG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 225622 0.67 0.907811
Target:  5'- cCCCACGAuGUCGGgauccaccacguAGGUC-UGCGAa- -3'
miRNA:   3'- -GGGUGCUcCAGCC------------UCCAGuGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 238422 0.67 0.901947
Target:  5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3'
miRNA:   3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 240572 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 23 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 78763 0.68 0.869584
Target:  5'- gCCACGAGGUCcGAGacGUCGCaGuCGACc -3'
miRNA:   3'- gGGUGCUCCAGcCUC--CAGUG-C-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 210774 0.68 0.855287
Target:  5'- cCCCGCGuGGGUUGGGGGaCAUcucuaGgGACAc -3'
miRNA:   3'- -GGGUGC-UCCAGCCUCCaGUG-----CgCUGU- -5'
13964 3' -57.9 NC_003521.1 + 32699 0.68 0.850856
Target:  5'- gCCACGgggcuaauauagcuaGGGUgGGGGG-UugGCGACGc -3'
miRNA:   3'- gGGUGC---------------UCCAgCCUCCaGugCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.