miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13964 3' -57.9 NC_003521.1 + 209702 0.69 0.832511
Target:  5'- cUCCACGAacaggcgcuccaGGUCcgaGGAGGUCGugcgcaGCGGCAg -3'
miRNA:   3'- -GGGUGCU------------CCAG---CCUCCAGUg-----CGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 29385 0.68 0.883125
Target:  5'- aCCGCGAGGccgaGGAGG--ACGaCGACGa -3'
miRNA:   3'- gGGUGCUCCag--CCUCCagUGC-GCUGU- -5'
13964 3' -57.9 NC_003521.1 + 122578 0.67 0.889601
Target:  5'- gUCACGGGGcUCGGuuucucGGUCGC-CGGCGu -3'
miRNA:   3'- gGGUGCUCC-AGCCu-----CCAGUGcGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 46441 0.66 0.938571
Target:  5'- uCCgGCGGGGcugCGGGGG-CugGuCGGCc -3'
miRNA:   3'- -GGgUGCUCCa--GCCUCCaGugC-GCUGu -5'
13964 3' -57.9 NC_003521.1 + 103215 0.66 0.933974
Target:  5'- aCCUggAUGAGGUCGccGGcCAgGCGGCGg -3'
miRNA:   3'- -GGG--UGCUCCAGCcuCCaGUgCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 188667 0.66 0.932554
Target:  5'- aCCCGCGguaccgucgcugacGGG-CGGGGGaUACGCGGg- -3'
miRNA:   3'- -GGGUGC--------------UCCaGCCUCCaGUGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 141355 0.66 0.929165
Target:  5'- uCCCACGGGuGcggCGGcGGUCG-GUGACGc -3'
miRNA:   3'- -GGGUGCUC-Ca--GCCuCCAGUgCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 170052 0.66 0.924144
Target:  5'- gCCAUGAGGUUGGcguucccGGUCGCGUu--- -3'
miRNA:   3'- gGGUGCUCCAGCCu------CCAGUGCGcugu -5'
13964 3' -57.9 NC_003521.1 + 104980 0.67 0.918911
Target:  5'- gCCGCGAGacGUCGGAGGagucuucuUCGCuGCuGCAg -3'
miRNA:   3'- gGGUGCUC--CAGCCUCC--------AGUG-CGcUGU- -5'
13964 3' -57.9 NC_003521.1 + 223489 0.66 0.924144
Target:  5'- gCCCGgGAGGUgGGGcGGaUCG-GCGACu -3'
miRNA:   3'- -GGGUgCUCCAgCCU-CC-AGUgCGCUGu -5'
13964 3' -57.9 NC_003521.1 + 86269 0.67 0.918911
Target:  5'- gCCgGCGAGGcgaagUUGGGGGUgGCGCccaACAc -3'
miRNA:   3'- -GGgUGCUCC-----AGCCUCCAgUGCGc--UGU- -5'
13964 3' -57.9 NC_003521.1 + 202017 0.67 0.913466
Target:  5'- gCCGCGAccaGGUcCGGGGGUC-CgGCGAa- -3'
miRNA:   3'- gGGUGCU---CCA-GCCUCCAGuG-CGCUgu -5'
13964 3' -57.9 NC_003521.1 + 225622 0.67 0.907811
Target:  5'- cCCCACGAuGUCGGgauccaccacguAGGUC-UGCGAa- -3'
miRNA:   3'- -GGGUGCUcCAGCC------------UCCAGuGCGCUgu -5'
13964 3' -57.9 NC_003521.1 + 238422 0.67 0.901947
Target:  5'- uCCCAgugcucgcgguCGAGGUCGGgcAGGagGCGCagGGCGg -3'
miRNA:   3'- -GGGU-----------GCUCCAGCC--UCCagUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 240572 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 23 0.67 0.901947
Target:  5'- uCCCGgGGGGUgGGGGGguguuUUugGCGGgGg -3'
miRNA:   3'- -GGGUgCUCCAgCCUCC-----AGugCGCUgU- -5'
13964 3' -57.9 NC_003521.1 + 58876 0.67 0.895876
Target:  5'- gCCCACGA-----GAGGUgGCGCGGCGa -3'
miRNA:   3'- -GGGUGCUccagcCUCCAgUGCGCUGU- -5'
13964 3' -57.9 NC_003521.1 + 103442 0.67 0.895876
Target:  5'- cUCCGCcAGGUCGcGGcGGUUGCGCGcCAc -3'
miRNA:   3'- -GGGUGcUCCAGC-CU-CCAGUGCGCuGU- -5'
13964 3' -57.9 NC_003521.1 + 92080 0.67 0.895876
Target:  5'- aCCG-GGGGUCGGGGGgUGCGCagGGCGg -3'
miRNA:   3'- gGGUgCUCCAGCCUCCaGUGCG--CUGU- -5'
13964 3' -57.9 NC_003521.1 + 198313 0.67 0.889601
Target:  5'- uCCCugGGGGU-GGGGGaUggGCGGCu -3'
miRNA:   3'- -GGGugCUCCAgCCUCCaGugCGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.