Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13964 | 5' | -50.4 | NC_003521.1 | + | 164448 | 0.66 | 0.999199 |
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Target: 5'- gGGCGCCGCG--------GGCCUgagCAUGa -3' miRNA: 3'- -CCGCGGCGCaacaauauUCGGA---GUAC- -5' |
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| 13964 | 5' | -50.4 | NC_003521.1 | + | 120246 | 0.66 | 0.999199 |
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Target: 5'- cGGCgGCCGCGccGUgcaucGCCUCGa- -3' miRNA: 3'- -CCG-CGGCGCaaCAauauuCGGAGUac -5' |
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| 13964 | 5' | -50.4 | NC_003521.1 | + | 118921 | 0.66 | 0.999199 |
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Target: 5'- cGGCGCCGCGgcGUgggcGGCggCGUc -3' miRNA: 3'- -CCGCGGCGCaaCAauauUCGgaGUAc -5' |
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| 13964 | 5' | -50.4 | NC_003521.1 | + | 111951 | 0.66 | 0.999199 |
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Target: 5'- uGGCGCgGCGgcaggAUGAGUCUguUGc -3' miRNA: 3'- -CCGCGgCGCaacaaUAUUCGGAguAC- -5' |
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| 13964 | 5' | -50.4 | NC_003521.1 | + | 59175 | 0.66 | 0.999199 |
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Target: 5'- cGGCGCCGCGggcagucaggagacGUUAaauauccUGAGUCgCGUGg -3' miRNA: 3'- -CCGCGGCGCaa------------CAAU-------AUUCGGaGUAC- -5' |
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| 13964 | 5' | -50.4 | NC_003521.1 | + | 123351 | 0.66 | 0.999199 |
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Target: 5'- aGCGCCGCGgccGU----GGCCUCc-- -3' miRNA: 3'- cCGCGGCGCaa-CAauauUCGGAGuac -5' |
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| 13964 | 5' | -50.4 | NC_003521.1 | + | 25570 | 0.66 | 0.999199 |
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Target: 5'- aGGCgGCCGCGggGacagGUGGGCUuguUCAUc -3' miRNA: 3'- -CCG-CGGCGCaaCaa--UAUUCGG---AGUAc -5' |
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| 13964 | 5' | -50.4 | NC_003521.1 | + | 211883 | 0.66 | 0.999346 |
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Target: 5'- gGGCGCCGCGcgUGgUAUAGugcGCCa---- -3' miRNA: 3'- -CCGCGGCGCa-ACaAUAUU---CGGaguac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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