miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 124418 0.66 0.859602
Target:  5'- aUCGCCUGCacgGCAGcgGCgGCggaggcagCGGCgCg -3'
miRNA:   3'- -AGCGGACGg--CGUCaaUG-CGa-------GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 24476 0.66 0.859602
Target:  5'- cCGCUggUGCUGCuGUUggacgACGUUCcGCCCa -3'
miRNA:   3'- aGCGG--ACGGCGuCAA-----UGCGAGcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 186612 0.66 0.852247
Target:  5'- aCGCCUGCCGCAGU-ACGaugaguaucCGGgaCa -3'
miRNA:   3'- aGCGGACGGCGUCAaUGCga-------GCCggG- -5'
13965 3' -59.4 NC_003521.1 + 118176 0.66 0.864642
Target:  5'- gCGCaCcGCCGUGGUUcuugagcuuuuuccGCGCcCGGCCg -3'
miRNA:   3'- aGCG-GaCGGCGUCAA--------------UGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 43119 0.66 0.852247
Target:  5'- -aGCgCUGCgGCGa--GCGCUCGGCgCu -3'
miRNA:   3'- agCG-GACGgCGUcaaUGCGAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 113097 0.66 0.873755
Target:  5'- cCGCCgUGgUGCAGgaGCGgcuCUCGGgCCa -3'
miRNA:   3'- aGCGG-ACgGCGUCaaUGC---GAGCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 105174 0.66 0.859602
Target:  5'- aCGCC-GCCG-----ACGCUgGGCCCc -3'
miRNA:   3'- aGCGGaCGGCgucaaUGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 100649 0.66 0.859602
Target:  5'- cCGuCCcGCCGC-GUUGCG-UCGGCUg -3'
miRNA:   3'- aGC-GGaCGGCGuCAAUGCgAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145651 0.66 0.859602
Target:  5'- gCGCCgagCGCgAGgUGCcCUCGGCCCg -3'
miRNA:   3'- aGCGGacgGCG-UCaAUGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 100184 0.66 0.859602
Target:  5'- gCGCCaGgCGCAG--GCuCUCGGCCg -3'
miRNA:   3'- aGCGGaCgGCGUCaaUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 54565 0.66 0.859602
Target:  5'- gCGCUUGaCGCGGg--UGUgCGGCCCg -3'
miRNA:   3'- aGCGGACgGCGUCaauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 168255 0.66 0.857415
Target:  5'- aCGCgUUGCCGCAcGagGCGCUgaucuggaucugcaCGGCCg -3'
miRNA:   3'- aGCG-GACGGCGU-CaaUGCGA--------------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 162298 0.66 0.852247
Target:  5'- aCGCCgggaGuCCGCGGaauccGCGUcgcguguccggUCGGCCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUCaa---UGCG-----------AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 102501 0.66 0.852247
Target:  5'- gUCGCgCaGCCGCAGguccAUG-UCGGCCa -3'
miRNA:   3'- -AGCG-GaCGGCGUCaa--UGCgAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 78786 0.66 0.852247
Target:  5'- gUCGaCCucgaUGUCGCAGgucgACGagCGGCCCu -3'
miRNA:   3'- -AGC-GG----ACGGCGUCaa--UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 32888 0.66 0.852247
Target:  5'- gCGCC-GCCGguGcUGcCGC-CGuGCCCg -3'
miRNA:   3'- aGCGGaCGGCguCaAU-GCGaGC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 150520 0.66 0.859602
Target:  5'- -gGCCgGCCGCGGUgcagGCcgacgugacguGCUCGgagauguaGCCCa -3'
miRNA:   3'- agCGGaCGGCGUCAa---UG-----------CGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 197035 0.67 0.821094
Target:  5'- cCGCgc-CCGCGGUcGCGC-CGGCCg -3'
miRNA:   3'- aGCGgacGGCGUCAaUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 43745 0.67 0.821094
Target:  5'- cCGCCgcgGCCaGCAcGgccgccGCGCU-GGCCCg -3'
miRNA:   3'- aGCGGa--CGG-CGU-Caa----UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 34587 0.67 0.837005
Target:  5'- aCGCCggGCUGCAGgcGCGCgcagaUGGaCUCg -3'
miRNA:   3'- aGCGGa-CGGCGUCaaUGCGa----GCC-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.