miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 145922 0.67 0.837005
Target:  5'- cUCGCggGCCGaGGgcaccucGCGCUCGGCgCg -3'
miRNA:   3'- -AGCGgaCGGCgUCaa-----UGCGAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 64602 0.67 0.804568
Target:  5'- gCGgCUGgCGCGGgacgacACGCuUCGGCCg -3'
miRNA:   3'- aGCgGACgGCGUCaa----UGCG-AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 56011 0.67 0.840108
Target:  5'- gCGCCUGUCGCugccgcccgcgcgcuGGgagGCGCUgCGcGCCg -3'
miRNA:   3'- aGCGGACGGCG---------------UCaa-UGCGA-GC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 197035 0.67 0.821094
Target:  5'- cCGCgc-CCGCGGUcGCGC-CGGCCg -3'
miRNA:   3'- aGCGgacGGCGUCAaUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145377 0.67 0.821094
Target:  5'- cCaCCUGCCgGUAGUUAgGCgccaGGUCCa -3'
miRNA:   3'- aGcGGACGG-CGUCAAUgCGag--CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 17105 0.67 0.821094
Target:  5'- cCGCCUGCgC-CGGcgaggACGgUCGGUCCu -3'
miRNA:   3'- aGCGGACG-GcGUCaa---UGCgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 43745 0.67 0.821094
Target:  5'- cCGCCgcgGCCaGCAcGgccgccGCGCU-GGCCCg -3'
miRNA:   3'- aGCGGa--CGG-CGU-Caa----UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 40780 0.67 0.821094
Target:  5'- gUCGCC-GCUGCuggaggaguucgAGaUGCGCUgCGGCgCCg -3'
miRNA:   3'- -AGCGGaCGGCG------------UCaAUGCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 224822 0.67 0.821094
Target:  5'- cUGCgCUGCCGCuGGUUccUGCUgGGCgCCg -3'
miRNA:   3'- aGCG-GACGGCG-UCAAu-GCGAgCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 201943 0.67 0.821094
Target:  5'- cCGUgUGCUGCcaccGGcgGCGCagcucgCGGCCCa -3'
miRNA:   3'- aGCGgACGGCG----UCaaUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 150097 0.67 0.824327
Target:  5'- aCGCCgaUGCUGCuGUUGCaGCUgcagcaggucggucaCGGCCg -3'
miRNA:   3'- aGCGG--ACGGCGuCAAUG-CGA---------------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 226448 0.67 0.82913
Target:  5'- -aGCa-GCUGCAG-UGCGUcUGGCCCu -3'
miRNA:   3'- agCGgaCGGCGUCaAUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 219179 0.67 0.82913
Target:  5'- -aGCCUGCugaCGCAGUcgagacccugGCGggCGGCCUc -3'
miRNA:   3'- agCGGACG---GCGUCAa---------UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 210114 0.67 0.82913
Target:  5'- gCGCuacgagguagagCUGCCGCaAGUggACGCUCGGaUCUc -3'
miRNA:   3'- aGCG------------GACGGCG-UCAa-UGCGAGCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 130211 0.67 0.82913
Target:  5'- -gGCCcGCgGCAGaacUGCGCcgucUCGGCCa -3'
miRNA:   3'- agCGGaCGgCGUCa--AUGCG----AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 143028 0.67 0.837005
Target:  5'- aCGCC-GCCGCGG--ACGCU-GGUCa -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 38577 0.67 0.837005
Target:  5'- aUCGCCcuugGCCGU----GC-CUCGGCCUg -3'
miRNA:   3'- -AGCGGa---CGGCGucaaUGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 238713 0.67 0.837005
Target:  5'- cCGCCgagGCCGCcc-UGCGCcUCcuGCCCg -3'
miRNA:   3'- aGCGGa--CGGCGucaAUGCG-AGc-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 221434 0.67 0.837005
Target:  5'- aUCGUgUGCCugggGCuGcUGCGCUgGGCCg -3'
miRNA:   3'- -AGCGgACGG----CGuCaAUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 112698 0.67 0.837005
Target:  5'- cCGCCUggGCCGCcugAGcggGCG-UCGGUCCg -3'
miRNA:   3'- aGCGGA--CGGCG---UCaa-UGCgAGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.