miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 143028 0.67 0.837005
Target:  5'- aCGCC-GCCGCGG--ACGCU-GGUCa -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 238713 0.67 0.837005
Target:  5'- cCGCCgagGCCGCcc-UGCGCcUCcuGCCCg -3'
miRNA:   3'- aGCGGa--CGGCGucaAUGCG-AGc-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 38577 0.67 0.837005
Target:  5'- aUCGCCcuugGCCGU----GC-CUCGGCCUg -3'
miRNA:   3'- -AGCGGa---CGGCGucaaUGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 150097 0.67 0.824327
Target:  5'- aCGCCgaUGCUGCuGUUGCaGCUgcagcaggucggucaCGGCCg -3'
miRNA:   3'- aGCGG--ACGGCGuCAAUG-CGA---------------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 85596 0.67 0.804568
Target:  5'- -gGCCUGCgGCGGgc-CGCg-GGCCa -3'
miRNA:   3'- agCGGACGgCGUCaauGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 221434 0.67 0.837005
Target:  5'- aUCGUgUGCCugggGCuGcUGCGCUgGGCCg -3'
miRNA:   3'- -AGCGgACGG----CGuCaAUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 43745 0.67 0.821094
Target:  5'- cCGCCgcgGCCaGCAcGgccgccGCGCU-GGCCCg -3'
miRNA:   3'- aGCGGa--CGG-CGU-Caa----UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 123394 0.67 0.821094
Target:  5'- gCGCCgcUGCCGUAcUU-CGUacagCGGCCCg -3'
miRNA:   3'- aGCGG--ACGGCGUcAAuGCGa---GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 113192 0.67 0.804568
Target:  5'- gUGCCcgucuucgUGCacgagcaGCAGUaccUGCGCUCGGgCCu -3'
miRNA:   3'- aGCGG--------ACGg------CGUCA---AUGCGAGCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 34587 0.67 0.837005
Target:  5'- aCGCCggGCUGCAGgcGCGCgcagaUGGaCUCg -3'
miRNA:   3'- aGCGGa-CGGCGUCaaUGCGa----GCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 53968 0.67 0.837005
Target:  5'- gUC-CUUGCCGUGGUcgugaucGCGCUCGacguuGCCCa -3'
miRNA:   3'- -AGcGGACGGCGUCAa------UGCGAGC-----CGGG- -5'
13965 3' -59.4 NC_003521.1 + 186354 0.67 0.83466
Target:  5'- aUCGUaCUGCgGCAGgcgucgauaaccauCGCcccgUCGGCCCa -3'
miRNA:   3'- -AGCG-GACGgCGUCaau-----------GCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 223838 0.67 0.82913
Target:  5'- gCGCCUGCUgucccuGCGGcUGCuGCUgCGGCUg -3'
miRNA:   3'- aGCGGACGG------CGUCaAUG-CGA-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 116866 0.67 0.82913
Target:  5'- aCGaCCUGCgcgCGCAGUgGCGCggcugcggCGGCgCg -3'
miRNA:   3'- aGC-GGACG---GCGUCAaUGCGa-------GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 239373 0.67 0.821094
Target:  5'- cCGUgUGCUGCcaccGGcgGCGCagcucgCGGCCCa -3'
miRNA:   3'- aGCGgACGGCG----UCaaUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 222164 0.67 0.821094
Target:  5'- gCGCCcccgugGCCaGCAGgucCGUgCGGCCCc -3'
miRNA:   3'- aGCGGa-----CGG-CGUCaauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 85315 0.67 0.821094
Target:  5'- gUCGCCgucGCUcCAGccUugGCccgCGGCCCg -3'
miRNA:   3'- -AGCGGa--CGGcGUCa-AugCGa--GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 112698 0.67 0.837005
Target:  5'- cCGCCUggGCCGCcugAGcggGCG-UCGGUCCg -3'
miRNA:   3'- aGCGGA--CGGCG---UCaa-UGCgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 221136 0.67 0.804568
Target:  5'- -aGCCacaCGUucuugggaaAGUUGgGCUCGGCCCa -3'
miRNA:   3'- agCGGacgGCG---------UCAAUgCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 64602 0.67 0.804568
Target:  5'- gCGgCUGgCGCGGgacgacACGCuUCGGCCg -3'
miRNA:   3'- aGCgGACgGCGUCaa----UGCG-AGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.