Results 101 - 120 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 118316 | 0.67 | 0.837005 |
Target: 5'- -gGCCUGcCCGCcGccGCGUU-GGCCCu -3' miRNA: 3'- agCGGAC-GGCGuCaaUGCGAgCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 186354 | 0.67 | 0.83466 |
Target: 5'- aUCGUaCUGCgGCAGgcgucgauaaccauCGCcccgUCGGCCCa -3' miRNA: 3'- -AGCG-GACGgCGUCaau-----------GCG----AGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 53968 | 0.67 | 0.837005 |
Target: 5'- gUC-CUUGCCGUGGUcgugaucGCGCUCGacguuGCCCa -3' miRNA: 3'- -AGcGGACGGCGUCAa------UGCGAGC-----CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 124188 | 0.68 | 0.78748 |
Target: 5'- gCGCCUGCCgGCugggGGUga-GCg-GGCCCu -3' miRNA: 3'- aGCGGACGG-CG----UCAaugCGagCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 226492 | 0.68 | 0.78748 |
Target: 5'- gUCGCgggUGUCGUAGgcguagaUGCGCgaauagCGGCCCu -3' miRNA: 3'- -AGCGg--ACGGCGUCa------AUGCGa-----GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 71503 | 0.68 | 0.769892 |
Target: 5'- aCGCCgGCCGCG---ACGCUgcgaccgacgcCGGCCg -3' miRNA: 3'- aGCGGaCGGCGUcaaUGCGA-----------GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 70743 | 0.68 | 0.769892 |
Target: 5'- uUCGuCCaGCUGCAGc-GCGCcgCGGCCg -3' miRNA: 3'- -AGC-GGaCGGCGUCaaUGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 74442 | 0.68 | 0.751863 |
Target: 5'- gCGCCgggcGCCGCG---GCGCagCGGCCa -3' miRNA: 3'- aGCGGa---CGGCGUcaaUGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 187439 | 0.68 | 0.78748 |
Target: 5'- cUGCUcGCCGCGGccUGCuccuGCUCGGUCUg -3' miRNA: 3'- aGCGGaCGGCGUCa-AUG----CGAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 131491 | 0.68 | 0.778745 |
Target: 5'- aUCGCC-GUCGCGacgcuGUcucugGCGC-CGGCCCc -3' miRNA: 3'- -AGCGGaCGGCGU-----CAa----UGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 6454 | 0.68 | 0.750038 |
Target: 5'- gUCaCUUGCCGCAGaucgucucguucUGCGCcUGGCCCc -3' miRNA: 3'- -AGcGGACGGCGUCa-----------AUGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 226335 | 0.68 | 0.778745 |
Target: 5'- -gGCCgGCCGCGGccgggGCGCgccuucgUGGCCg -3' miRNA: 3'- agCGGaCGGCGUCaa---UGCGa------GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 192301 | 0.68 | 0.796091 |
Target: 5'- gCGUCUGCCGCGc--ACGC-CGGCg- -3' miRNA: 3'- aGCGGACGGCGUcaaUGCGaGCCGgg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 77239 | 0.68 | 0.796091 |
Target: 5'- aUCGCC-GCCaGCAucacGCGCaUCGGCCg -3' miRNA: 3'- -AGCGGaCGG-CGUcaa-UGCG-AGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 197150 | 0.68 | 0.769892 |
Target: 5'- -gGcCCUGCUGgaAGUUccGCGCUgGGCCUg -3' miRNA: 3'- agC-GGACGGCg-UCAA--UGCGAgCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 150259 | 0.68 | 0.796091 |
Target: 5'- gUCGUCgUGCgGCGGgUGCGCgccGCCCg -3' miRNA: 3'- -AGCGG-ACGgCGUCaAUGCGagcCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 223468 | 0.68 | 0.796091 |
Target: 5'- -gGCC-GCCGCGccgGCGUcaCGGCCCg -3' miRNA: 3'- agCGGaCGGCGUcaaUGCGa-GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 144184 | 0.68 | 0.796091 |
Target: 5'- cCGCCUGCCGC----GCGCUggagaaCGGCa- -3' miRNA: 3'- aGCGGACGGCGucaaUGCGA------GCCGgg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 129717 | 0.68 | 0.796091 |
Target: 5'- cUGCCgGCCGCGGcccgucgACGCgagCGcGUCCg -3' miRNA: 3'- aGCGGaCGGCGUCaa-----UGCGa--GC-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 70593 | 0.68 | 0.796091 |
Target: 5'- gUCGCCgaGCuCGCGGUUgagaaaGCGCuugUCGGUCa -3' miRNA: 3'- -AGCGGa-CG-GCGUCAA------UGCG---AGCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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