Results 121 - 140 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 197150 | 0.68 | 0.769892 |
Target: 5'- -gGcCCUGCUGgaAGUUccGCGCUgGGCCUg -3' miRNA: 3'- agC-GGACGGCg-UCAA--UGCGAgCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 226492 | 0.68 | 0.78748 |
Target: 5'- gUCGCgggUGUCGUAGgcguagaUGCGCgaauagCGGCCCu -3' miRNA: 3'- -AGCGg--ACGGCGUCa------AUGCGa-----GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 125611 | 0.68 | 0.78748 |
Target: 5'- cCGUgUcGCCGCGGaUGCagucCUUGGCCCg -3' miRNA: 3'- aGCGgA-CGGCGUCaAUGc---GAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 187439 | 0.68 | 0.78748 |
Target: 5'- cUGCUcGCCGCGGccUGCuccuGCUCGGUCUg -3' miRNA: 3'- aGCGGaCGGCGUCa-AUG----CGAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 70593 | 0.68 | 0.796091 |
Target: 5'- gUCGCCgaGCuCGCGGUUgagaaaGCGCuugUCGGUCa -3' miRNA: 3'- -AGCGGa-CG-GCGUCAA------UGCG---AGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 129717 | 0.68 | 0.796091 |
Target: 5'- cUGCCgGCCGCGGcccgucgACGCgagCGcGUCCg -3' miRNA: 3'- aGCGGaCGGCGUCaa-----UGCGa--GC-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 144184 | 0.68 | 0.796091 |
Target: 5'- cCGCCUGCCGC----GCGCUggagaaCGGCa- -3' miRNA: 3'- aGCGGACGGCGucaaUGCGA------GCCGgg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 223468 | 0.68 | 0.796091 |
Target: 5'- -gGCC-GCCGCGccgGCGUcaCGGCCCg -3' miRNA: 3'- agCGGaCGGCGUcaaUGCGa-GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 193164 | 0.68 | 0.769892 |
Target: 5'- gCGUCUGCUGCugcuGUUGCGCagCuGCCg -3' miRNA: 3'- aGCGGACGGCGu---CAAUGCGa-GcCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 198183 | 0.68 | 0.760929 |
Target: 5'- aCGCCUacaCCGCGGcugcugACGUguucccagCGGCCCg -3' miRNA: 3'- aGCGGAc--GGCGUCaa----UGCGa-------GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 226335 | 0.68 | 0.778745 |
Target: 5'- -gGCCgGCCGCGGccgggGCGCgccuucgUGGCCg -3' miRNA: 3'- agCGGaCGGCGUCaa---UGCGa------GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 116636 | 0.68 | 0.760929 |
Target: 5'- aCGUCgcGCgGCAGcaGCaGCUCGGCCUc -3' miRNA: 3'- aGCGGa-CGgCGUCaaUG-CGAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 224082 | 0.68 | 0.760929 |
Target: 5'- gCGCCcgcgGUgGCGGcgGCGCa-GGCCCg -3' miRNA: 3'- aGCGGa---CGgCGUCaaUGCGagCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 19384 | 0.68 | 0.751863 |
Target: 5'- gUUGCCgaGCaCGCAGUggUACGUgcCGGCCg -3' miRNA: 3'- -AGCGGa-CG-GCGUCA--AUGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 74442 | 0.68 | 0.751863 |
Target: 5'- gCGCCgggcGCCGCG---GCGCagCGGCCa -3' miRNA: 3'- aGCGGa---CGGCGUcaaUGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 129830 | 0.68 | 0.751863 |
Target: 5'- cCGCCUGCUGCuGggGCccgugGC-CGuGCCCu -3' miRNA: 3'- aGCGGACGGCGuCaaUG-----CGaGC-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 163357 | 0.68 | 0.751863 |
Target: 5'- cCGCCUcaugaaCCGCcagaAGgaGCGC-CGGCCCg -3' miRNA: 3'- aGCGGAc-----GGCG----UCaaUGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 69178 | 0.68 | 0.755501 |
Target: 5'- aCGCCcGCCGCGGccGCGCuagacauacccgacgUCGGCg- -3' miRNA: 3'- aGCGGaCGGCGUCaaUGCG---------------AGCCGgg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 197278 | 0.68 | 0.759123 |
Target: 5'- cCGCCucUGUCGCGGcgucucucgGCUCGGCCg -3' miRNA: 3'- aGCGG--ACGGCGUCaaug-----CGAGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 203369 | 0.68 | 0.760929 |
Target: 5'- aCGCCUccgcagaaaccGCCGCGGUcGC-CUCaGGUCCc -3' miRNA: 3'- aGCGGA-----------CGGCGUCAaUGcGAG-CCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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