miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 223015 0.69 0.724129
Target:  5'- aCGCCgugGCCGUAGcccagacgGCGCgcgagaugagCGGCCUc -3'
miRNA:   3'- aGCGGa--CGGCGUCaa------UGCGa---------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 67856 0.69 0.705272
Target:  5'- -aGCUUGcCCGCGuGUUgGCGaCUCuGGCCCg -3'
miRNA:   3'- agCGGAC-GGCGU-CAA-UGC-GAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 138080 0.69 0.714732
Target:  5'- gCGCCUuaauaaUGCAGcUGCGCUCGuccGCCCg -3'
miRNA:   3'- aGCGGAcg----GCGUCaAUGCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 203369 0.68 0.760929
Target:  5'- aCGCCUccgcagaaaccGCCGCGGUcGC-CUCaGGUCCc -3'
miRNA:   3'- aGCGGA-----------CGGCGUCAaUGcGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 124188 0.68 0.78748
Target:  5'- gCGCCUGCCgGCugggGGUga-GCg-GGCCCu -3'
miRNA:   3'- aGCGGACGG-CG----UCAaugCGagCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 125611 0.68 0.78748
Target:  5'- cCGUgUcGCCGCGGaUGCagucCUUGGCCCg -3'
miRNA:   3'- aGCGgA-CGGCGUCaAUGc---GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 187439 0.68 0.78748
Target:  5'- cUGCUcGCCGCGGccUGCuccuGCUCGGUCUg -3'
miRNA:   3'- aGCGGaCGGCGUCa-AUG----CGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 70593 0.68 0.796091
Target:  5'- gUCGCCgaGCuCGCGGUUgagaaaGCGCuugUCGGUCa -3'
miRNA:   3'- -AGCGGa-CG-GCGUCAA------UGCG---AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 129717 0.68 0.796091
Target:  5'- cUGCCgGCCGCGGcccgucgACGCgagCGcGUCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaa-----UGCGa--GC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 144184 0.68 0.796091
Target:  5'- cCGCCUGCCGC----GCGCUggagaaCGGCa- -3'
miRNA:   3'- aGCGGACGGCGucaaUGCGA------GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 105005 0.68 0.751863
Target:  5'- uUCG-CUGCUGCAGgagcgggaacgggaGCGCUucgaggaCGGCCCg -3'
miRNA:   3'- -AGCgGACGGCGUCaa------------UGCGA-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 223468 0.68 0.796091
Target:  5'- -gGCC-GCCGCGccgGCGUcaCGGCCCg -3'
miRNA:   3'- agCGGaCGGCGUcaaUGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 197150 0.68 0.769892
Target:  5'- -gGcCCUGCUGgaAGUUccGCGCUgGGCCUg -3'
miRNA:   3'- agC-GGACGGCg-UCAA--UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 197278 0.68 0.759123
Target:  5'- cCGCCucUGUCGCGGcgucucucgGCUCGGCCg -3'
miRNA:   3'- aGCGG--ACGGCGUCaaug-----CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 71503 0.68 0.769892
Target:  5'- aCGCCgGCCGCG---ACGCUgcgaccgacgcCGGCCg -3'
miRNA:   3'- aGCGGaCGGCGUcaaUGCGA-----------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 226492 0.68 0.78748
Target:  5'- gUCGCgggUGUCGUAGgcguagaUGCGCgaauagCGGCCCu -3'
miRNA:   3'- -AGCGg--ACGGCGUCa------AUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 70743 0.68 0.769892
Target:  5'- uUCGuCCaGCUGCAGc-GCGCcgCGGCCg -3'
miRNA:   3'- -AGC-GGaCGGCGUCaaUGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 193164 0.68 0.769892
Target:  5'- gCGUCUGCUGCugcuGUUGCGCagCuGCCg -3'
miRNA:   3'- aGCGGACGGCGu---CAAUGCGa-GcCGGg -5'
13965 3' -59.4 NC_003521.1 + 198183 0.68 0.760929
Target:  5'- aCGCCUacaCCGCGGcugcugACGUguucccagCGGCCCg -3'
miRNA:   3'- aGCGGAc--GGCGUCaa----UGCGa-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 69178 0.68 0.755501
Target:  5'- aCGCCcGCCGCGGccGCGCuagacauacccgacgUCGGCg- -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCG---------------AGCCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.