miRNA display CGI


Results 101 - 120 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 70593 0.68 0.796091
Target:  5'- gUCGCCgaGCuCGCGGUUgagaaaGCGCuugUCGGUCa -3'
miRNA:   3'- -AGCGGa-CG-GCGUCAA------UGCG---AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 187439 0.68 0.78748
Target:  5'- cUGCUcGCCGCGGccUGCuccuGCUCGGUCUg -3'
miRNA:   3'- aGCGGaCGGCGUCa-AUG----CGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 125611 0.68 0.78748
Target:  5'- cCGUgUcGCCGCGGaUGCagucCUUGGCCCg -3'
miRNA:   3'- aGCGgA-CGGCGUCaAUGc---GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 138148 0.68 0.769892
Target:  5'- -gGCCgaggcGUCGCGGUccagGCGCUCGGgCg -3'
miRNA:   3'- agCGGa----CGGCGUCAa---UGCGAGCCgGg -5'
13965 3' -59.4 NC_003521.1 + 109628 0.68 0.786612
Target:  5'- cUGCCUGCCGCugg-ACGaguccuuCUCGGCgCu -3'
miRNA:   3'- aGCGGACGGCGucaaUGC-------GAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 129830 0.68 0.751863
Target:  5'- cCGCCUGCUGCuGggGCccgugGC-CGuGCCCu -3'
miRNA:   3'- aGCGGACGGCGuCaaUG-----CGaGC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 163357 0.68 0.751863
Target:  5'- cCGCCUcaugaaCCGCcagaAGgaGCGC-CGGCCCg -3'
miRNA:   3'- aGCGGAc-----GGCG----UCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 69178 0.68 0.755501
Target:  5'- aCGCCcGCCGCGGccGCGCuagacauacccgacgUCGGCg- -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCG---------------AGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 197278 0.68 0.759123
Target:  5'- cCGCCucUGUCGCGGcgucucucgGCUCGGCCg -3'
miRNA:   3'- aGCGG--ACGGCGUCaaug-----CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 203369 0.68 0.760929
Target:  5'- aCGCCUccgcagaaaccGCCGCGGUcGC-CUCaGGUCCc -3'
miRNA:   3'- aGCGGA-----------CGGCGUCAaUGcGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 198183 0.68 0.760929
Target:  5'- aCGCCUacaCCGCGGcugcugACGUguucccagCGGCCCg -3'
miRNA:   3'- aGCGGAc--GGCGUCaa----UGCGa-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 193164 0.68 0.769892
Target:  5'- gCGUCUGCUGCugcuGUUGCGCagCuGCCg -3'
miRNA:   3'- aGCGGACGGCGu---CAAUGCGa-GcCGGg -5'
13965 3' -59.4 NC_003521.1 + 124188 0.68 0.78748
Target:  5'- gCGCCUGCCgGCugggGGUga-GCg-GGCCCu -3'
miRNA:   3'- aGCGGACGG-CG----UCAaugCGagCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 71503 0.68 0.769892
Target:  5'- aCGCCgGCCGCG---ACGCUgcgaccgacgcCGGCCg -3'
miRNA:   3'- aGCGGaCGGCGUcaaUGCGA-----------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 197150 0.68 0.769892
Target:  5'- -gGcCCUGCUGgaAGUUccGCGCUgGGCCUg -3'
miRNA:   3'- agC-GGACGGCg-UCAA--UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 131491 0.68 0.778745
Target:  5'- aUCGCC-GUCGCGacgcuGUcucugGCGC-CGGCCCc -3'
miRNA:   3'- -AGCGGaCGGCGU-----CAa----UGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 70402 0.68 0.78748
Target:  5'- gCGCUcGCCGCAGcucgAgGCccugauagCGGCCCu -3'
miRNA:   3'- aGCGGaCGGCGUCaa--UgCGa-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226335 0.68 0.778745
Target:  5'- -gGCCgGCCGCGGccgggGCGCgccuucgUGGCCg -3'
miRNA:   3'- agCGGaCGGCGUCaa---UGCGa------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 117038 0.68 0.778745
Target:  5'- -aGCgUGCCGCG---GCGg-CGGCCCa -3'
miRNA:   3'- agCGgACGGCGUcaaUGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 224581 0.68 0.778745
Target:  5'- -aGCacggGCUGCG---GCGCUCGGCUCg -3'
miRNA:   3'- agCGga--CGGCGUcaaUGCGAGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.