Results 121 - 140 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 92264 | 0.68 | 0.778745 |
Target: 5'- gCGCCUcGCCGCucccgcuccGUUcGCGCcggaUCGGCCg -3' miRNA: 3'- aGCGGA-CGGCGu--------CAA-UGCG----AGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 85902 | 0.68 | 0.796091 |
Target: 5'- gCGgCUGCCGgGGgggaggUGCacgaccuCUCGGCCCu -3' miRNA: 3'- aGCgGACGGCgUCa-----AUGc------GAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 117038 | 0.68 | 0.778745 |
Target: 5'- -aGCgUGCCGCG---GCGg-CGGCCCa -3' miRNA: 3'- agCGgACGGCGUcaaUGCgaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 226335 | 0.68 | 0.778745 |
Target: 5'- -gGCCgGCCGCGGccgggGCGCgccuucgUGGCCg -3' miRNA: 3'- agCGGaCGGCGUCaa---UGCGa------GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 53968 | 0.67 | 0.837005 |
Target: 5'- gUC-CUUGCCGUGGUcgugaucGCGCUCGacguuGCCCa -3' miRNA: 3'- -AGcGGACGGCGUCAa------UGCGAGC-----CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 34587 | 0.67 | 0.837005 |
Target: 5'- aCGCCggGCUGCAGgcGCGCgcagaUGGaCUCg -3' miRNA: 3'- aGCGGa-CGGCGUCaaUGCGa----GCC-GGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 118316 | 0.67 | 0.837005 |
Target: 5'- -gGCCUGcCCGCcGccGCGUU-GGCCCu -3' miRNA: 3'- agCGGAC-GGCGuCaaUGCGAgCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 202602 | 0.67 | 0.837005 |
Target: 5'- cCGCCgagGCCGCcc-UGCGCcUCcuGCCCg -3' miRNA: 3'- aGCGGa--CGGCGucaAUGCG-AGc-CGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 77489 | 0.67 | 0.844713 |
Target: 5'- cCGCUacaaccGCCGCuAGUgcCGCUCGcGCCg -3' miRNA: 3'- aGCGGa-----CGGCG-UCAauGCGAGC-CGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 116866 | 0.67 | 0.82913 |
Target: 5'- aCGaCCUGCgcgCGCAGUgGCGCggcugcggCGGCgCg -3' miRNA: 3'- aGC-GGACG---GCGUCAaUGCGa-------GCCGgG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 239373 | 0.67 | 0.821094 |
Target: 5'- cCGUgUGCUGCcaccGGcgGCGCagcucgCGGCCCa -3' miRNA: 3'- aGCGgACGGCG----UCaaUGCGa-----GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 145576 | 0.67 | 0.837005 |
Target: 5'- aCGUgCUGCgGCGGcacgACGCggCGGCCg -3' miRNA: 3'- aGCG-GACGgCGUCaa--UGCGa-GCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 222164 | 0.67 | 0.821094 |
Target: 5'- gCGCCcccgugGCCaGCAGgucCGUgCGGCCCc -3' miRNA: 3'- aGCGGa-----CGG-CGUCaauGCGaGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 85315 | 0.67 | 0.821094 |
Target: 5'- gUCGCCgucGCUcCAGccUugGCccgCGGCCCg -3' miRNA: 3'- -AGCGGa--CGGcGUCa-AugCGa--GCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 223143 | 0.67 | 0.812905 |
Target: 5'- -aGCCaguugGCCG-GGUUACGCagGGCCa -3' miRNA: 3'- agCGGa----CGGCgUCAAUGCGagCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 136746 | 0.67 | 0.812905 |
Target: 5'- gCGuCCUGCCGCGcc--CGCUCGaGCUg -3' miRNA: 3'- aGC-GGACGGCGUcaauGCGAGC-CGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 221136 | 0.67 | 0.804568 |
Target: 5'- -aGCCacaCGUucuugggaaAGUUGgGCUCGGCCCa -3' miRNA: 3'- agCGGacgGCG---------UCAAUgCGAGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 64602 | 0.67 | 0.804568 |
Target: 5'- gCGgCUGgCGCGGgacgacACGCuUCGGCCg -3' miRNA: 3'- aGCgGACgGCGUCaa----UGCG-AGCCGGg -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 186354 | 0.67 | 0.83466 |
Target: 5'- aUCGUaCUGCgGCAGgcgucgauaaccauCGCcccgUCGGCCCa -3' miRNA: 3'- -AGCG-GACGgCGUCaau-----------GCG----AGCCGGG- -5' |
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13965 | 3' | -59.4 | NC_003521.1 | + | 223838 | 0.67 | 0.82913 |
Target: 5'- gCGCCUGCUgucccuGCGGcUGCuGCUgCGGCUg -3' miRNA: 3'- aGCGGACGG------CGUCaAUG-CGA-GCCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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