miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 148884 0.69 0.705272
Target:  5'- uUCGCCgcccgGCCGCGcgacgaGCGCUgugagGGCCCg -3'
miRNA:   3'- -AGCGGa----CGGCGUcaa---UGCGAg----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 19093 0.69 0.705272
Target:  5'- cCGCCUcUCGCGGUUGCGgUC-GCUCa -3'
miRNA:   3'- aGCGGAcGGCGUCAAUGCgAGcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 67856 0.69 0.705272
Target:  5'- -aGCUUGcCCGCGuGUUgGCGaCUCuGGCCCg -3'
miRNA:   3'- agCGGAC-GGCGU-CAA-UGC-GAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 74617 0.69 0.710955
Target:  5'- cUCGCC-GCCGCgccaacagcgggguGGUgcgcgGgacccuggagcgcCGCUCGGCCCu -3'
miRNA:   3'- -AGCGGaCGGCG--------------UCAa----U-------------GCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 4603 0.69 0.713789
Target:  5'- cCGCCgGCgGCGGUgGCGCcaggcauggacggUCGaGCCCc -3'
miRNA:   3'- aGCGGaCGgCGUCAaUGCG-------------AGC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 226839 0.69 0.714732
Target:  5'- cUCGCCcGCCGCc---GCGCcgggcaGGCCCa -3'
miRNA:   3'- -AGCGGaCGGCGucaaUGCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 138080 0.69 0.714732
Target:  5'- gCGCCUuaauaaUGCAGcUGCGCUCGuccGCCCg -3'
miRNA:   3'- aGCGGAcg----GCGUCaAUGCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 151571 0.69 0.714732
Target:  5'- cCGCCUgGCCGCc-UUGCGCgcgUCGGaaCCCa -3'
miRNA:   3'- aGCGGA-CGGCGucAAUGCG---AGCC--GGG- -5'
13965 3' -59.4 NC_003521.1 + 196451 0.69 0.715675
Target:  5'- cCGgCUGCCGCGcgaaccuccgcugGCaCUCGGCCCg -3'
miRNA:   3'- aGCgGACGGCGUcaa----------UGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 190042 0.69 0.717558
Target:  5'- gUCGCCgaucgaccaggaccGCCGCgcGGUcuucacgUACGUUCuGGCCCg -3'
miRNA:   3'- -AGCGGa-------------CGGCG--UCA-------AUGCGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117367 0.69 0.724129
Target:  5'- gUCGCCaacCCGCGGUcccCGCUaCGGCgCCu -3'
miRNA:   3'- -AGCGGac-GGCGUCAau-GCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 223015 0.69 0.724129
Target:  5'- aCGCCgugGCCGUAGcccagacgGCGCgcgagaugagCGGCCUc -3'
miRNA:   3'- aGCGGa--CGGCGUCaa------UGCGa---------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 104475 0.69 0.724129
Target:  5'- cUCGCUggGCUGCAGcagcACGUaaUCGGCCa -3'
miRNA:   3'- -AGCGGa-CGGCGUCaa--UGCG--AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 129797 0.69 0.724129
Target:  5'- gCGCC-GCCGCgauggagaacuGGUcgGCGCUCGaGCUCc -3'
miRNA:   3'- aGCGGaCGGCG-----------UCAa-UGCGAGC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 53175 0.69 0.724129
Target:  5'- cCGCCcucGCCGaugaagauggcCAGcgGCGCgCGGCCCg -3'
miRNA:   3'- aGCGGa--CGGC-----------GUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 55606 0.69 0.733455
Target:  5'- cUCGUCguacaCGCAGUccCGCgCGGCCCa -3'
miRNA:   3'- -AGCGGacg--GCGUCAauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 114406 0.69 0.733455
Target:  5'- cCGCCUgGCCGCcaucGCGCagGGCCg -3'
miRNA:   3'- aGCGGA-CGGCGucaaUGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 162589 0.69 0.733455
Target:  5'- cUGCCgGCUGCGGUggcacuCGCUCGacaGCCUc -3'
miRNA:   3'- aGCGGaCGGCGUCAau----GCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 131337 0.69 0.733455
Target:  5'- gCGCgaGCCGCGGUcgccgccacCGCguccgaGGCCCg -3'
miRNA:   3'- aGCGgaCGGCGUCAau-------GCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 196068 0.69 0.733455
Target:  5'- cCGCCUuCCGCGGUc-CGuCUCGGCguCCa -3'
miRNA:   3'- aGCGGAcGGCGUCAauGC-GAGCCG--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.