miRNA display CGI


Results 101 - 120 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 197150 0.68 0.769892
Target:  5'- -gGcCCUGCUGgaAGUUccGCGCUgGGCCUg -3'
miRNA:   3'- agC-GGACGGCg-UCAA--UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 120486 0.68 0.769892
Target:  5'- aUGCaCUGCCaGguGUUGCGCcUGGUCa -3'
miRNA:   3'- aGCG-GACGG-CguCAAUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 193164 0.68 0.769892
Target:  5'- gCGUCUGCUGCugcuGUUGCGCagCuGCCg -3'
miRNA:   3'- aGCGGACGGCGu---CAAUGCGa-GcCGGg -5'
13965 3' -59.4 NC_003521.1 + 138148 0.68 0.769892
Target:  5'- -gGCCgaggcGUCGCGGUccagGCGCUCGGgCg -3'
miRNA:   3'- agCGGa----CGGCGUCAa---UGCGAGCCgGg -5'
13965 3' -59.4 NC_003521.1 + 226335 0.68 0.778745
Target:  5'- -gGCCgGCCGCGGccgggGCGCgccuucgUGGCCg -3'
miRNA:   3'- agCGGaCGGCGUCaa---UGCGa------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 117038 0.68 0.778745
Target:  5'- -aGCgUGCCGCG---GCGg-CGGCCCa -3'
miRNA:   3'- agCGgACGGCGUcaaUGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 131491 0.68 0.778745
Target:  5'- aUCGCC-GUCGCGacgcuGUcucugGCGC-CGGCCCc -3'
miRNA:   3'- -AGCGGaCGGCGU-----CAa----UGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 92264 0.68 0.778745
Target:  5'- gCGCCUcGCCGCucccgcuccGUUcGCGCcggaUCGGCCg -3'
miRNA:   3'- aGCGGA-CGGCGu--------CAA-UGCG----AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 224581 0.68 0.778745
Target:  5'- -aGCacggGCUGCG---GCGCUCGGCUCg -3'
miRNA:   3'- agCGga--CGGCGUcaaUGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 109628 0.68 0.786612
Target:  5'- cUGCCUGCCGCugg-ACGaguccuuCUCGGCgCu -3'
miRNA:   3'- aGCGGACGGCGucaaUGC-------GAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 52506 0.68 0.78748
Target:  5'- cCGCCUGCCGCugcccaacuguAGcccgcCGCccuacCGGCCCc -3'
miRNA:   3'- aGCGGACGGCG-----------UCaau--GCGa----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 226492 0.68 0.78748
Target:  5'- gUCGCgggUGUCGUAGgcguagaUGCGCgaauagCGGCCCu -3'
miRNA:   3'- -AGCGg--ACGGCGUCa------AUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 124188 0.68 0.78748
Target:  5'- gCGCCUGCCgGCugggGGUga-GCg-GGCCCu -3'
miRNA:   3'- aGCGGACGG-CG----UCAaugCGagCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 125611 0.68 0.78748
Target:  5'- cCGUgUcGCCGCGGaUGCagucCUUGGCCCg -3'
miRNA:   3'- aGCGgA-CGGCGUCaAUGc---GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 187439 0.68 0.78748
Target:  5'- cUGCUcGCCGCGGccUGCuccuGCUCGGUCUg -3'
miRNA:   3'- aGCGGaCGGCGUCa-AUG----CGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 70402 0.68 0.78748
Target:  5'- gCGCUcGCCGCAGcucgAgGCccugauagCGGCCCu -3'
miRNA:   3'- aGCGGaCGGCGUCaa--UgCGa-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 70593 0.68 0.796091
Target:  5'- gUCGCCgaGCuCGCGGUUgagaaaGCGCuugUCGGUCa -3'
miRNA:   3'- -AGCGGa-CG-GCGUCAA------UGCG---AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 223468 0.68 0.796091
Target:  5'- -gGCC-GCCGCGccgGCGUcaCGGCCCg -3'
miRNA:   3'- agCGGaCGGCGUcaaUGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 144184 0.68 0.796091
Target:  5'- cCGCCUGCCGC----GCGCUggagaaCGGCa- -3'
miRNA:   3'- aGCGGACGGCGucaaUGCGA------GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 129717 0.68 0.796091
Target:  5'- cUGCCgGCCGCGGcccgucgACGCgagCGcGUCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaa-----UGCGa--GC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.