miRNA display CGI


Results 121 - 140 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 129717 0.68 0.796091
Target:  5'- cUGCCgGCCGCGGcccgucgACGCgagCGcGUCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaa-----UGCGa--GC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 144184 0.68 0.796091
Target:  5'- cCGCCUGCCGC----GCGCUggagaaCGGCa- -3'
miRNA:   3'- aGCGGACGGCGucaaUGCGA------GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 223468 0.68 0.796091
Target:  5'- -gGCC-GCCGCGccgGCGUcaCGGCCCg -3'
miRNA:   3'- agCGGaCGGCGUcaaUGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 150259 0.68 0.796091
Target:  5'- gUCGUCgUGCgGCGGgUGCGCgccGCCCg -3'
miRNA:   3'- -AGCGG-ACGgCGUCaAUGCGagcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 103143 0.67 0.804568
Target:  5'- gCGCCU-CUGCGccucGcUACGCaCGGCCCa -3'
miRNA:   3'- aGCGGAcGGCGU----CaAUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 6731 0.67 0.804568
Target:  5'- aCGCCaugcccuggucgUGCCGguGUUu--CUCGGCCg -3'
miRNA:   3'- aGCGG------------ACGGCguCAAugcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 221136 0.67 0.804568
Target:  5'- -aGCCacaCGUucuugggaaAGUUGgGCUCGGCCCa -3'
miRNA:   3'- agCGGacgGCG---------UCAAUgCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 85596 0.67 0.804568
Target:  5'- -gGCCUGCgGCGGgc-CGCg-GGCCa -3'
miRNA:   3'- agCGGACGgCGUCaauGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 64602 0.67 0.804568
Target:  5'- gCGgCUGgCGCGGgacgacACGCuUCGGCCg -3'
miRNA:   3'- aGCgGACgGCGUCaa----UGCG-AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 113192 0.67 0.804568
Target:  5'- gUGCCcgucuucgUGCacgagcaGCAGUaccUGCGCUCGGgCCu -3'
miRNA:   3'- aGCGG--------ACGg------CGUCA---AUGCGAGCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 59905 0.67 0.812905
Target:  5'- gCGUCUGCCGCAccaACGCcugCGaGCCg -3'
miRNA:   3'- aGCGGACGGCGUcaaUGCGa--GC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 27281 0.67 0.812905
Target:  5'- gCGCCUggaGCCuCGGUUucgAUGCcgUGGCCCg -3'
miRNA:   3'- aGCGGA---CGGcGUCAA---UGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 136746 0.67 0.812905
Target:  5'- gCGuCCUGCCGCGcc--CGCUCGaGCUg -3'
miRNA:   3'- aGC-GGACGGCGUcaauGCGAGC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 223143 0.67 0.812905
Target:  5'- -aGCCaguugGCCG-GGUUACGCagGGCCa -3'
miRNA:   3'- agCGGa----CGGCgUCAAUGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 75099 0.67 0.812905
Target:  5'- gCGUgaGgCGCGGgacgccgucGCGCUCGGCgCCg -3'
miRNA:   3'- aGCGgaCgGCGUCaa-------UGCGAGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 85315 0.67 0.821094
Target:  5'- gUCGCCgucGCUcCAGccUugGCccgCGGCCCg -3'
miRNA:   3'- -AGCGGa--CGGcGUCa-AugCGa--GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 222164 0.67 0.821094
Target:  5'- gCGCCcccgugGCCaGCAGgucCGUgCGGCCCc -3'
miRNA:   3'- aGCGGa-----CGG-CGUCaauGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 239373 0.67 0.821094
Target:  5'- cCGUgUGCUGCcaccGGcgGCGCagcucgCGGCCCa -3'
miRNA:   3'- aGCGgACGGCG----UCaaUGCGa-----GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 197035 0.67 0.821094
Target:  5'- cCGCgc-CCGCGGUcGCGC-CGGCCg -3'
miRNA:   3'- aGCGgacGGCGUCAaUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 225081 0.67 0.821094
Target:  5'- cCGCCaGCCGCAGacgcccUACGCcacgCGcGUCCc -3'
miRNA:   3'- aGCGGaCGGCGUCa-----AUGCGa---GC-CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.