miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 74617 0.69 0.710955
Target:  5'- cUCGCC-GCCGCgccaacagcgggguGGUgcgcgGgacccuggagcgcCGCUCGGCCCu -3'
miRNA:   3'- -AGCGGaCGGCG--------------UCAa----U-------------GCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 74854 0.7 0.666953
Target:  5'- gCGCCgGCCGCGGg-ACGC-CGcGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGaGC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 75099 0.67 0.812905
Target:  5'- gCGUgaGgCGCGGgacgccgucGCGCUCGGCgCCg -3'
miRNA:   3'- aGCGgaCgGCGUCaa-------UGCGAGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 75552 0.66 0.866774
Target:  5'- gCGCCgGCgGCGGcUACGC-CaGcGCCCu -3'
miRNA:   3'- aGCGGaCGgCGUCaAUGCGaG-C-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 77239 0.68 0.796091
Target:  5'- aUCGCC-GCCaGCAucacGCGCaUCGGCCg -3'
miRNA:   3'- -AGCGGaCGG-CGUcaa-UGCG-AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 77489 0.67 0.844713
Target:  5'- cCGCUacaaccGCCGCuAGUgcCGCUCGcGCCg -3'
miRNA:   3'- aGCGGa-----CGGCG-UCAauGCGAGC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 78018 0.66 0.866774
Target:  5'- cUUGCgCUGaCC-CAGaUACaGCUCGGCCa -3'
miRNA:   3'- -AGCG-GAC-GGcGUCaAUG-CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 78786 0.66 0.852247
Target:  5'- gUCGaCCucgaUGUCGCAGgucgACGagCGGCCCu -3'
miRNA:   3'- -AGC-GG----ACGGCGUCaa--UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 85315 0.67 0.821094
Target:  5'- gUCGCCgucGCUcCAGccUugGCccgCGGCCCg -3'
miRNA:   3'- -AGCGGa--CGGcGUCa-AugCGa--GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 85385 0.71 0.618534
Target:  5'- cCGCCU-CacaaGCGGcUGCGCUUGGCCg -3'
miRNA:   3'- aGCGGAcGg---CGUCaAUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 85596 0.67 0.804568
Target:  5'- -gGCCUGCgGCGGgc-CGCg-GGCCa -3'
miRNA:   3'- agCGGACGgCGUCaauGCGagCCGGg -5'
13965 3' -59.4 NC_003521.1 + 85902 0.68 0.796091
Target:  5'- gCGgCUGCCGgGGgggaggUGCacgaccuCUCGGCCCu -3'
miRNA:   3'- aGCgGACGGCgUCa-----AUGc------GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 91920 0.71 0.599184
Target:  5'- gCGCCagggaGCCGCGGgcACGC-CGGCUUu -3'
miRNA:   3'- aGCGGa----CGGCGUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 92264 0.68 0.778745
Target:  5'- gCGCCUcGCCGCucccgcuccGUUcGCGCcggaUCGGCCg -3'
miRNA:   3'- aGCGGA-CGGCGu--------CAA-UGCG----AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 96780 0.71 0.618534
Target:  5'- gUCGCCgccgGCagcaGCGGcgGCGCUCGGgCa -3'
miRNA:   3'- -AGCGGa---CGg---CGUCaaUGCGAGCCgGg -5'
13965 3' -59.4 NC_003521.1 + 99217 0.68 0.751863
Target:  5'- gUCGCUaGCCGCcaccacccGUcucCGCUCGGUCCc -3'
miRNA:   3'- -AGCGGaCGGCGu-------CAau-GCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 100184 0.66 0.859602
Target:  5'- gCGCCaGgCGCAG--GCuCUCGGCCg -3'
miRNA:   3'- aGCGGaCgGCGUCaaUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 100649 0.66 0.859602
Target:  5'- cCGuCCcGCCGC-GUUGCG-UCGGCUg -3'
miRNA:   3'- aGC-GGaCGGCGuCAAUGCgAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 101776 0.66 0.880543
Target:  5'- gCGCCUGCUGguCGGccGCGUcUGGCCg -3'
miRNA:   3'- aGCGGACGGC--GUCaaUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 102501 0.66 0.852247
Target:  5'- gUCGCgCaGCCGCAGguccAUG-UCGGCCa -3'
miRNA:   3'- -AGCG-GaCGGCGUCaa--UGCgAGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.