Results 81 - 100 of 227 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 102610 | 0.71 | 0.608851 |
Target: 5'- gCGCCUGCCGCcaccccgGCG-UCGGCgCCc -3' miRNA: 3'- aGCGGACGGCGucaa---UGCgAGCCG-GG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 103143 | 0.67 | 0.804568 |
Target: 5'- gCGCCU-CUGCGccucGcUACGCaCGGCCCa -3' miRNA: 3'- aGCGGAcGGCGU----CaAUGCGaGCCGGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 103444 | 0.68 | 0.751863 |
Target: 5'- cCGCCaggucGCgGCGGUUGCGCgccaCGGCg- -3' miRNA: 3'- aGCGGa----CGgCGUCAAUGCGa---GCCGgg -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 103571 | 0.75 | 0.369204 |
Target: 5'- gCGCCUGCUGgAGUaccgGCGCguggUGGCCUa -3' miRNA: 3'- aGCGGACGGCgUCAa---UGCGa---GCCGGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 103739 | 0.73 | 0.504627 |
Target: 5'- gCGCgUGCCGCAGUucgucgccUACGCcgUGGCgCg -3' miRNA: 3'- aGCGgACGGCGUCA--------AUGCGa-GCCGgG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 103769 | 0.69 | 0.705272 |
Target: 5'- gCGCCUGCUGC---UGgGCUC-GCCCu -3' miRNA: 3'- aGCGGACGGCGucaAUgCGAGcCGGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 104475 | 0.69 | 0.724129 |
Target: 5'- cUCGCUggGCUGCAGcagcACGUaaUCGGCCa -3' miRNA: 3'- -AGCGGa-CGGCGUCaa--UGCG--AGCCGGg -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 105005 | 0.68 | 0.751863 |
Target: 5'- uUCG-CUGCUGCAGgagcgggaacgggaGCGCUucgaggaCGGCCCg -3' miRNA: 3'- -AGCgGACGGCGUCaa------------UGCGA-------GCCGGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 105174 | 0.66 | 0.859602 |
Target: 5'- aCGCC-GCCG-----ACGCUgGGCCCc -3' miRNA: 3'- aGCGGaCGGCgucaaUGCGAgCCGGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 105861 | 0.66 | 0.859602 |
Target: 5'- gCGCCUGa-GCGGcUGCGC-CGGCg- -3' miRNA: 3'- aGCGGACggCGUCaAUGCGaGCCGgg -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 106436 | 0.66 | 0.883203 |
Target: 5'- gUCGCUggcgaagcGCaCGCAGUaGCGCauguugagcgacuucUCGGCCa -3' miRNA: 3'- -AGCGGa-------CG-GCGUCAaUGCG---------------AGCCGGg -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 109628 | 0.68 | 0.786612 |
Target: 5'- cUGCCUGCCGCugg-ACGaguccuuCUCGGCgCu -3' miRNA: 3'- aGCGGACGGCGucaaUGC-------GAGCCGgG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 109977 | 0.66 | 0.873755 |
Target: 5'- gCGCCUGCaGUAGggcgGCcuGC-CGGUCCa -3' miRNA: 3'- aGCGGACGgCGUCaa--UG--CGaGCCGGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 112408 | 0.66 | 0.873755 |
Target: 5'- gCGCCgaccgGCCGCcuuucGGaccgACGCccgcucaggCGGCCCa -3' miRNA: 3'- aGCGGa----CGGCG-----UCaa--UGCGa--------GCCGGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 112698 | 0.67 | 0.837005 |
Target: 5'- cCGCCUggGCCGCcugAGcggGCG-UCGGUCCg -3' miRNA: 3'- aGCGGA--CGGCG---UCaa-UGCgAGCCGGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 113097 | 0.66 | 0.873755 |
Target: 5'- cCGCCgUGgUGCAGgaGCGgcuCUCGGgCCa -3' miRNA: 3'- aGCGG-ACgGCGUCaaUGC---GAGCCgGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 113129 | 0.73 | 0.504627 |
Target: 5'- -gGCCaGCCGCGGgaGCagcuggggcaGCUCGGCCa -3' miRNA: 3'- agCGGaCGGCGUCaaUG----------CGAGCCGGg -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 113192 | 0.67 | 0.804568 |
Target: 5'- gUGCCcgucuucgUGCacgagcaGCAGUaccUGCGCUCGGgCCu -3' miRNA: 3'- aGCGG--------ACGg------CGUCA---AUGCGAGCCgGG- -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 114406 | 0.69 | 0.733455 |
Target: 5'- cCGCCUgGCCGCcaucGCGCagGGCCg -3' miRNA: 3'- aGCGGA-CGGCGucaaUGCGagCCGGg -5' |
|||||||
13965 | 3' | -59.4 | NC_003521.1 | + | 116636 | 0.68 | 0.760929 |
Target: 5'- aCGUCgcGCgGCAGcaGCaGCUCGGCCUc -3' miRNA: 3'- aGCGGa-CGgCGUCaaUG-CGAGCCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home