miRNA display CGI


Results 101 - 120 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 116780 0.7 0.637921
Target:  5'- cCGCC-GCCGCGGc-ACGCU-GGCCg -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 116866 0.67 0.82913
Target:  5'- aCGaCCUGCgcgCGCAGUgGCGCggcugcggCGGCgCg -3'
miRNA:   3'- aGC-GGACG---GCGUCAaUGCGa-------GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 117038 0.68 0.778745
Target:  5'- -aGCgUGCCGCG---GCGg-CGGCCCa -3'
miRNA:   3'- agCGgACGGCGUcaaUGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117147 0.72 0.523107
Target:  5'- cCGCCacGCCGCAGc-GCGC-CGGCUCc -3'
miRNA:   3'- aGCGGa-CGGCGUCaaUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 117367 0.69 0.724129
Target:  5'- gUCGCCaacCCGCGGUcccCGCUaCGGCgCCu -3'
miRNA:   3'- -AGCGGac-GGCGUCAau-GCGA-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 117636 0.67 0.821094
Target:  5'- gCGCCguagcgggGaCCGCGGgUugGCgacUGGCCCc -3'
miRNA:   3'- aGCGGa-------C-GGCGUCaAugCGa--GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 118039 0.66 0.859602
Target:  5'- cCGCCagggGuCCGCA-UUGCuCUCGGCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUcAAUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 118176 0.66 0.864642
Target:  5'- gCGCaCcGCCGUGGUUcuugagcuuuuuccGCGCcCGGCCg -3'
miRNA:   3'- aGCG-GaCGGCGUCAA--------------UGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 118316 0.67 0.837005
Target:  5'- -gGCCUGcCCGCcGccGCGUU-GGCCCu -3'
miRNA:   3'- agCGGAC-GGCGuCaaUGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 119187 0.66 0.866774
Target:  5'- aCGCC-GCCGCcc--ACGCcgCGGCgCCg -3'
miRNA:   3'- aGCGGaCGGCGucaaUGCGa-GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 120004 0.72 0.523107
Target:  5'- gCGCCgcugGCUGUAGUUGaucaGgUCGGCCUu -3'
miRNA:   3'- aGCGGa---CGGCGUCAAUg---CgAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 120486 0.68 0.769892
Target:  5'- aUGCaCUGCCaGguGUUGCGCcUGGUCa -3'
miRNA:   3'- aGCG-GACGG-CguCAAUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 121044 0.66 0.873755
Target:  5'- cUCGUC-GCCGC---UGCGC-CGGUCCc -3'
miRNA:   3'- -AGCGGaCGGCGucaAUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 121784 0.71 0.618534
Target:  5'- -gGCCacgggcagGUgGCGGUacuUGCGCUCGGCCg -3'
miRNA:   3'- agCGGa-------CGgCGUCA---AUGCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 123394 0.67 0.821094
Target:  5'- gCGCCgcUGCCGUAcUU-CGUacagCGGCCCg -3'
miRNA:   3'- aGCGG--ACGGCGUcAAuGCGa---GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 123443 0.74 0.442398
Target:  5'- cCGCCUgcgacugcGCCGCgAGacggUGCGC-CGGCCCu -3'
miRNA:   3'- aGCGGA--------CGGCG-UCa---AUGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 123608 0.66 0.880543
Target:  5'- -gGCCacgGCCGCG---GCGCUgGGgCCg -3'
miRNA:   3'- agCGGa--CGGCGUcaaUGCGAgCCgGG- -5'
13965 3' -59.4 NC_003521.1 + 124188 0.68 0.78748
Target:  5'- gCGCCUGCCgGCugggGGUga-GCg-GGCCCu -3'
miRNA:   3'- aGCGGACGG-CG----UCAaugCGagCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 124418 0.66 0.859602
Target:  5'- aUCGCCUGCacgGCAGcgGCgGCggaggcagCGGCgCg -3'
miRNA:   3'- -AGCGGACGg--CGUCaaUG-CGa-------GCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 125611 0.68 0.78748
Target:  5'- cCGUgUcGCCGCGGaUGCagucCUUGGCCCg -3'
miRNA:   3'- aGCGgA-CGGCGUCaAUGc---GAGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.