miRNA display CGI


Results 141 - 160 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 142241 0.66 0.859602
Target:  5'- -aGCUcccGCUGCAGcuccugACGCUCGucGCCCa -3'
miRNA:   3'- agCGGa--CGGCGUCaa----UGCGAGC--CGGG- -5'
13965 3' -59.4 NC_003521.1 + 143028 0.67 0.837005
Target:  5'- aCGCC-GCCGCGG--ACGCU-GGUCa -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 144184 0.68 0.796091
Target:  5'- cCGCCUGCCGC----GCGCUggagaaCGGCa- -3'
miRNA:   3'- aGCGGACGGCGucaaUGCGA------GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 144296 0.69 0.695756
Target:  5'- cUCGCugCUGCCGCAc--GCGCUgCGGUUCg -3'
miRNA:   3'- -AGCG--GACGGCGUcaaUGCGA-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 144466 0.67 0.843949
Target:  5'- gCGCaCUGCUGCAGcUUgccguucuccagcGCGCggcaggCGGCgCCg -3'
miRNA:   3'- aGCG-GACGGCGUC-AA-------------UGCGa-----GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 145249 0.7 0.676589
Target:  5'- gCGgCUGCCuGCAGg-GCGCcuccUCGGCCUc -3'
miRNA:   3'- aGCgGACGG-CGUCaaUGCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 145325 0.66 0.880543
Target:  5'- gUCGuCCgaGCCGCccagacGGUcaucgUGcCGCUCGGCCa -3'
miRNA:   3'- -AGC-GGa-CGGCG------UCA-----AU-GCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145377 0.67 0.821094
Target:  5'- cCaCCUGCCgGUAGUUAgGCgccaGGUCCa -3'
miRNA:   3'- aGcGGACGG-CGUCAAUgCGag--CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 145576 0.67 0.837005
Target:  5'- aCGUgCUGCgGCGGcacgACGCggCGGCCg -3'
miRNA:   3'- aGCG-GACGgCGUCaa--UGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145651 0.66 0.859602
Target:  5'- gCGCCgagCGCgAGgUGCcCUCGGCCCg -3'
miRNA:   3'- aGCGGacgGCG-UCaAUGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 145922 0.67 0.837005
Target:  5'- cUCGCggGCCGaGGgcaccucGCGCUCGGCgCg -3'
miRNA:   3'- -AGCGgaCGGCgUCaa-----UGCGAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 146179 0.66 0.866774
Target:  5'- cCGCgaGuuGCuGgccgGCGgaCGGCCCu -3'
miRNA:   3'- aGCGgaCggCGuCaa--UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 146685 0.72 0.570337
Target:  5'- aUCGUa-GCCGCgcaGGUUgACGCggCGGCCCa -3'
miRNA:   3'- -AGCGgaCGGCG---UCAA-UGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 148511 0.66 0.873755
Target:  5'- -gGCCcaUGCCGCGGcUGCGcCUCcuCCCg -3'
miRNA:   3'- agCGG--ACGGCGUCaAUGC-GAGccGGG- -5'
13965 3' -59.4 NC_003521.1 + 148884 0.69 0.705272
Target:  5'- uUCGCCgcccgGCCGCGcgacgaGCGCUgugagGGCCCg -3'
miRNA:   3'- -AGCGGa----CGGCGUcaa---UGCGAg----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 149174 0.71 0.628226
Target:  5'- gUGCUcgaUGCCGCGGcgGCGCuccucggcgUCGGCCa -3'
miRNA:   3'- aGCGG---ACGGCGUCaaUGCG---------AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 150097 0.67 0.824327
Target:  5'- aCGCCgaUGCUGCuGUUGCaGCUgcagcaggucggucaCGGCCg -3'
miRNA:   3'- aGCGG--ACGGCGuCAAUG-CGA---------------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 150259 0.68 0.796091
Target:  5'- gUCGUCgUGCgGCGGgUGCGCgccGCCCg -3'
miRNA:   3'- -AGCGG-ACGgCGUCaAUGCGagcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 150520 0.66 0.859602
Target:  5'- -gGCCgGCCGCGGUgcagGCcgacgugacguGCUCGgagauguaGCCCa -3'
miRNA:   3'- agCGGaCGGCGUCAa---UG-----------CGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 151228 0.7 0.690023
Target:  5'- cCGCCagcGCCGC-GUcgcgcgacugcacgaUgaucugaccGCGCUCGGCCCa -3'
miRNA:   3'- aGCGGa--CGGCGuCA---------------A---------UGCGAGCCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.