miRNA display CGI


Results 41 - 60 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 200682 0.73 0.46856
Target:  5'- gUCGCUUGCCGCGGgcgUGCagggaggccgaaGCggCGGCCg -3'
miRNA:   3'- -AGCGGACGGCGUCa--AUG------------CGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 198183 0.68 0.760929
Target:  5'- aCGCCUacaCCGCGGcugcugACGUguucccagCGGCCCg -3'
miRNA:   3'- aGCGGAc--GGCGUCaa----UGCGa-------GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 197278 0.68 0.759123
Target:  5'- cCGCCucUGUCGCGGcgucucucgGCUCGGCCg -3'
miRNA:   3'- aGCGG--ACGGCGUCaaug-----CGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 197150 0.68 0.769892
Target:  5'- -gGcCCUGCUGgaAGUUccGCGCUgGGCCUg -3'
miRNA:   3'- agC-GGACGGCg-UCAA--UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 197035 0.67 0.821094
Target:  5'- cCGCgc-CCGCGGUcGCGC-CGGCCg -3'
miRNA:   3'- aGCGgacGGCGUCAaUGCGaGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 196451 0.69 0.715675
Target:  5'- cCGgCUGCCGCGcgaaccuccgcugGCaCUCGGCCCg -3'
miRNA:   3'- aGCgGACGGCGUcaa----------UGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 196068 0.69 0.733455
Target:  5'- cCGCCUuCCGCGGUc-CGuCUCGGCguCCa -3'
miRNA:   3'- aGCGGAcGGCGUCAauGC-GAGCCG--GG- -5'
13965 3' -59.4 NC_003521.1 + 193164 0.68 0.769892
Target:  5'- gCGUCUGCUGCugcuGUUGCGCagCuGCCg -3'
miRNA:   3'- aGCGGACGGCGu---CAAUGCGa-GcCGGg -5'
13965 3' -59.4 NC_003521.1 + 192301 0.68 0.796091
Target:  5'- gCGUCUGCCGCGc--ACGC-CGGCg- -3'
miRNA:   3'- aGCGGACGGCGUcaaUGCGaGCCGgg -5'
13965 3' -59.4 NC_003521.1 + 190042 0.69 0.717558
Target:  5'- gUCGCCgaucgaccaggaccGCCGCgcGGUcuucacgUACGUUCuGGCCCg -3'
miRNA:   3'- -AGCGGa-------------CGGCG--UCA-------AUGCGAG-CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 188056 0.66 0.880543
Target:  5'- gUUGUCgaUGCCGCGGUagagcCGCUCGucuCCCg -3'
miRNA:   3'- -AGCGG--ACGGCGUCAau---GCGAGCc--GGG- -5'
13965 3' -59.4 NC_003521.1 + 187439 0.68 0.78748
Target:  5'- cUGCUcGCCGCGGccUGCuccuGCUCGGUCUg -3'
miRNA:   3'- aGCGGaCGGCGUCa-AUG----CGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 186612 0.66 0.852247
Target:  5'- aCGCCUGCCGCAGU-ACGaugaguaucCGGgaCa -3'
miRNA:   3'- aGCGGACGGCGUCAaUGCga-------GCCggG- -5'
13965 3' -59.4 NC_003521.1 + 186354 0.67 0.83466
Target:  5'- aUCGUaCUGCgGCAGgcgucgauaaccauCGCcccgUCGGCCCa -3'
miRNA:   3'- -AGCG-GACGgCGUCaau-----------GCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 172320 0.66 0.866774
Target:  5'- aCGCCgcUGgCGCAG--GC-CUCGGCCg -3'
miRNA:   3'- aGCGG--ACgGCGUCaaUGcGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 168255 0.66 0.857415
Target:  5'- aCGCgUUGCCGCAcGagGCGCUgaucuggaucugcaCGGCCg -3'
miRNA:   3'- aGCG-GACGGCGU-CaaUGCGA--------------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 164703 0.69 0.742702
Target:  5'- -gGCCgcgGCCGCGGUgGCGCUgcuagcaccagCGGCg- -3'
miRNA:   3'- agCGGa--CGGCGUCAaUGCGA-----------GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 164016 0.71 0.608851
Target:  5'- cCGCCgugagcGCCGCuGUUGcCGC-CGGCgCCg -3'
miRNA:   3'- aGCGGa-----CGGCGuCAAU-GCGaGCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 163383 0.66 0.852247
Target:  5'- aUGCCcgaggagGCgGCGGUggucgugGCGCUgGcGCCCg -3'
miRNA:   3'- aGCGGa------CGgCGUCAa------UGCGAgC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 163357 0.68 0.751863
Target:  5'- cCGCCUcaugaaCCGCcagaAGgaGCGC-CGGCCCg -3'
miRNA:   3'- aGCGGAc-----GGCG----UCaaUGCGaGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.