miRNA display CGI


Results 61 - 80 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 162589 0.69 0.733455
Target:  5'- cUGCCgGCUGCGGUggcacuCGCUCGacaGCCUc -3'
miRNA:   3'- aGCGGaCGGCGUCAau----GCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 162298 0.66 0.852247
Target:  5'- aCGCCgggaGuCCGCGGaauccGCGUcgcguguccggUCGGCCCg -3'
miRNA:   3'- aGCGGa---C-GGCGUCaa---UGCG-----------AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 156162 0.74 0.433862
Target:  5'- -gGCCUGCuCGCAGggcgUGCGCUCGaugaagguGUCCu -3'
miRNA:   3'- agCGGACG-GCGUCa---AUGCGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 154298 0.71 0.596287
Target:  5'- gCGCCUGCCGCGGcaAgagcaugcaccaggUGCUgCGGaCCCg -3'
miRNA:   3'- aGCGGACGGCGUCaaU--------------GCGA-GCC-GGG- -5'
13965 3' -59.4 NC_003521.1 + 153377 0.74 0.45975
Target:  5'- cCGCCUGCUGCcGUcGCGCgc-GCCCg -3'
miRNA:   3'- aGCGGACGGCGuCAaUGCGagcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 151571 0.69 0.714732
Target:  5'- cCGCCUgGCCGCc-UUGCGCgcgUCGGaaCCCa -3'
miRNA:   3'- aGCGGA-CGGCGucAAUGCG---AGCC--GGG- -5'
13965 3' -59.4 NC_003521.1 + 151508 0.65 0.885177
Target:  5'- gUCGCCgucccagGCCGCGGaagaagaugaagaagGCGCcgCGGUCa -3'
miRNA:   3'- -AGCGGa------CGGCGUCaa-------------UGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 151228 0.7 0.690023
Target:  5'- cCGCCagcGCCGC-GUcgcgcgacugcacgaUgaucugaccGCGCUCGGCCCa -3'
miRNA:   3'- aGCGGa--CGGCGuCA---------------A---------UGCGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 150520 0.66 0.859602
Target:  5'- -gGCCgGCCGCGGUgcagGCcgacgugacguGCUCGgagauguaGCCCa -3'
miRNA:   3'- agCGGaCGGCGUCAa---UG-----------CGAGC--------CGGG- -5'
13965 3' -59.4 NC_003521.1 + 150259 0.68 0.796091
Target:  5'- gUCGUCgUGCgGCGGgUGCGCgccGCCCg -3'
miRNA:   3'- -AGCGG-ACGgCGUCaAUGCGagcCGGG- -5'
13965 3' -59.4 NC_003521.1 + 150097 0.67 0.824327
Target:  5'- aCGCCgaUGCUGCuGUUGCaGCUgcagcaggucggucaCGGCCg -3'
miRNA:   3'- aGCGG--ACGGCGuCAAUG-CGA---------------GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 149174 0.71 0.628226
Target:  5'- gUGCUcgaUGCCGCGGcgGCGCuccucggcgUCGGCCa -3'
miRNA:   3'- aGCGG---ACGGCGUCaaUGCG---------AGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 148884 0.69 0.705272
Target:  5'- uUCGCCgcccgGCCGCGcgacgaGCGCUgugagGGCCCg -3'
miRNA:   3'- -AGCGGa----CGGCGUcaa---UGCGAg----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 148511 0.66 0.873755
Target:  5'- -gGCCcaUGCCGCGGcUGCGcCUCcuCCCg -3'
miRNA:   3'- agCGG--ACGGCGUCaAUGC-GAGccGGG- -5'
13965 3' -59.4 NC_003521.1 + 146685 0.72 0.570337
Target:  5'- aUCGUa-GCCGCgcaGGUUgACGCggCGGCCCa -3'
miRNA:   3'- -AGCGgaCGGCG---UCAA-UGCGa-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 146179 0.66 0.866774
Target:  5'- cCGCgaGuuGCuGgccgGCGgaCGGCCCu -3'
miRNA:   3'- aGCGgaCggCGuCaa--UGCgaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 145922 0.67 0.837005
Target:  5'- cUCGCggGCCGaGGgcaccucGCGCUCGGCgCg -3'
miRNA:   3'- -AGCGgaCGGCgUCaa-----UGCGAGCCGgG- -5'
13965 3' -59.4 NC_003521.1 + 145651 0.66 0.859602
Target:  5'- gCGCCgagCGCgAGgUGCcCUCGGCCCg -3'
miRNA:   3'- aGCGGacgGCG-UCaAUGcGAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 145576 0.67 0.837005
Target:  5'- aCGUgCUGCgGCGGcacgACGCggCGGCCg -3'
miRNA:   3'- aGCG-GACGgCGUCaa--UGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145377 0.67 0.821094
Target:  5'- cCaCCUGCCgGUAGUUAgGCgccaGGUCCa -3'
miRNA:   3'- aGcGGACGG-CGUCAAUgCGag--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.