miRNA display CGI


Results 81 - 100 of 227 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13965 3' -59.4 NC_003521.1 + 145325 0.66 0.880543
Target:  5'- gUCGuCCgaGCCGCccagacGGUcaucgUGcCGCUCGGCCa -3'
miRNA:   3'- -AGC-GGa-CGGCG------UCA-----AU-GCGAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 145249 0.7 0.676589
Target:  5'- gCGgCUGCCuGCAGg-GCGCcuccUCGGCCUc -3'
miRNA:   3'- aGCgGACGG-CGUCaaUGCG----AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 144466 0.67 0.843949
Target:  5'- gCGCaCUGCUGCAGcUUgccguucuccagcGCGCggcaggCGGCgCCg -3'
miRNA:   3'- aGCG-GACGGCGUC-AA-------------UGCGa-----GCCG-GG- -5'
13965 3' -59.4 NC_003521.1 + 144296 0.69 0.695756
Target:  5'- cUCGCugCUGCCGCAc--GCGCUgCGGUUCg -3'
miRNA:   3'- -AGCG--GACGGCGUcaaUGCGA-GCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 144184 0.68 0.796091
Target:  5'- cCGCCUGCCGC----GCGCUggagaaCGGCa- -3'
miRNA:   3'- aGCGGACGGCGucaaUGCGA------GCCGgg -5'
13965 3' -59.4 NC_003521.1 + 143028 0.67 0.837005
Target:  5'- aCGCC-GCCGCGG--ACGCU-GGUCa -3'
miRNA:   3'- aGCGGaCGGCGUCaaUGCGAgCCGGg -5'
13965 3' -59.4 NC_003521.1 + 142241 0.66 0.859602
Target:  5'- -aGCUcccGCUGCAGcuccugACGCUCGucGCCCa -3'
miRNA:   3'- agCGGa--CGGCGUCaa----UGCGAGC--CGGG- -5'
13965 3' -59.4 NC_003521.1 + 142231 0.69 0.742702
Target:  5'- -gGCCUcGUCGC---UGCGCUCgcgGGCCCg -3'
miRNA:   3'- agCGGA-CGGCGucaAUGCGAG---CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 140484 0.7 0.637921
Target:  5'- cCGCCaucaUGCUGCAcg-GCGaCUCGGCCg -3'
miRNA:   3'- aGCGG----ACGGCGUcaaUGC-GAGCCGGg -5'
13965 3' -59.4 NC_003521.1 + 138148 0.68 0.769892
Target:  5'- -gGCCgaggcGUCGCGGUccagGCGCUCGGgCg -3'
miRNA:   3'- agCGGa----CGGCGUCAa---UGCGAGCCgGg -5'
13965 3' -59.4 NC_003521.1 + 138080 0.69 0.714732
Target:  5'- gCGCCUuaauaaUGCAGcUGCGCUCGuccGCCCg -3'
miRNA:   3'- aGCGGAcg----GCGUCaAUGCGAGC---CGGG- -5'
13965 3' -59.4 NC_003521.1 + 138058 0.71 0.599184
Target:  5'- gUCGCCcgcgaccGCCGCGGacagcugagGCGCU-GGCCCu -3'
miRNA:   3'- -AGCGGa------CGGCGUCaa-------UGCGAgCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 137883 0.75 0.400703
Target:  5'- gCGCCUGgaCCGCG---ACGcCUCGGCCCu -3'
miRNA:   3'- aGCGGAC--GGCGUcaaUGC-GAGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 137520 0.66 0.866774
Target:  5'- cCGCuCUGcCCGCuGc--CGCcgUCGGCCCc -3'
miRNA:   3'- aGCG-GAC-GGCGuCaauGCG--AGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 137207 0.66 0.873755
Target:  5'- gUCGCgUGCCaggaacuccCAGUcACGCUgGcGCCCc -3'
miRNA:   3'- -AGCGgACGGc--------GUCAaUGCGAgC-CGGG- -5'
13965 3' -59.4 NC_003521.1 + 137157 0.7 0.657291
Target:  5'- cCGCCaugGCCGCGGc--CGCagCGGCCg -3'
miRNA:   3'- aGCGGa--CGGCGUCaauGCGa-GCCGGg -5'
13965 3' -59.4 NC_003521.1 + 136746 0.67 0.812905
Target:  5'- gCGuCCUGCCGCGcc--CGCUCGaGCUg -3'
miRNA:   3'- aGC-GGACGGCGUcaauGCGAGC-CGGg -5'
13965 3' -59.4 NC_003521.1 + 131491 0.68 0.778745
Target:  5'- aUCGCC-GUCGCGacgcuGUcucugGCGC-CGGCCCc -3'
miRNA:   3'- -AGCGGaCGGCGU-----CAa----UGCGaGCCGGG- -5'
13965 3' -59.4 NC_003521.1 + 131337 0.69 0.733455
Target:  5'- gCGCgaGCCGCGGUcgccgccacCGCguccgaGGCCCg -3'
miRNA:   3'- aGCGgaCGGCGUCAau-------GCGag----CCGGG- -5'
13965 3' -59.4 NC_003521.1 + 130211 0.67 0.82913
Target:  5'- -gGCCcGCgGCAGaacUGCGCcgucUCGGCCa -3'
miRNA:   3'- agCGGaCGgCGUCa--AUGCG----AGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.